Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  588 bits (1515), Expect = e-172
 Identities = 335/1021 (32%), Positives = 565/1021 (55%), Gaps = 14/1021 (1%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++A+ + NR I   + ++    G  ++  LG+ EDP FT K  ++ T +PGA+ ++V  +
Sbjct: 5    LSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEEVARQ 64

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  +EK + +    + + S S  G SQ+T   +++    D+P++W ++R+KV D++  L
Sbjct: 65   VTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKDIPELWYQIRKKVADIRHTL 124

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PP +  P   D+FG  +G + A+TGEG+ Y  L DY D ++ +L+ +  V KV + G Q 
Sbjct: 125  PPEIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLIGLQD 184

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E+V+IE+S  +++TLG+  + V   L  QN VS AG     SE +++  +G FD VE++ 
Sbjct: 185  EKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSVEQIR 244

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
               +  R       + DVAEV RG+ + P+  + F G+ A+ + VS   G +++ +G+  
Sbjct: 245  QFPI--RVGDRTFRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKDGGDILVLGKAL 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            +     L +  P G+ + +V  QP  V   V  FV  L +A+ IV++V  F +GLR+GL+
Sbjct: 303  EGEFERLAHNLPAGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLGLRTGLV 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            + L + L +  TF  M YF I L +ISLGALV+ALG+LVD+AI+ VE + I  ++G  RL
Sbjct: 363  VALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRL 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +AA+   T T +P+L  T+I    F PI  +  +TGEY  ++F V+ I+L+ SW  A+  
Sbjct: 423  KAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVTIALLTSWVAAVVF 482

Query: 502  TPFFADLF------FRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGL 555
             P+  +            +    G   DPY    +   RR +E+C+RR    + + +   
Sbjct: 483  VPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRLVEWCVRRRKTVILLTIAAF 542

Query: 556  AASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTT 615
              S+  F  V Q FFP+S  P  MVD+ + EG  +  T   + +LE  L  Q+ +D+   
Sbjct: 543  VGSILLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVKQLEALLKQQDGIDNYVA 602

Query: 616  TAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQI 675
              G G  RF L    +   A++ +        +    L +   + +D ++P +  ++ ++
Sbjct: 603  YVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLISTVDQQFPDLRARVTRL 662

Query: 676  ELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNES 735
            E GP  G  ++ R+ G      R++A +V D +  +P   N+  DW E +K +  + ++ 
Sbjct: 663  ENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVHLDWEEPSKAVFLEIDQD 722

Query: 736  QARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSP 795
            +AR  G++ + +  FL  S  G T+  YR+   L+ I+ R   +ER ++ N+  + + + 
Sbjct: 723  RARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTLQERSELANLGSLALPTD 782

Query: 796  ALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEA 855
               + + L QV    E  +E+ +I  +NR   +TV A  D+  +E  ATL +++ P ++ 
Sbjct: 783  N-GQSVALSQVAT-LEYGFEEGIIWHRNRLPTVTVRA--DIYDQEQPATLVKQILPTLQE 838

Query: 856  I--PLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVP 913
            I   LP GY LE GG  E S   + S+   MPL  + +  + +    S   +++V+LT P
Sbjct: 839  IRAKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLMIQLRSFSRTVMVFLTAP 898

Query: 914  LAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDA 973
            L +IGVT  LL    PFGF+A+LG ++L+GM+++N ++L+DQIE ++ +G + + A+++A
Sbjct: 899  LGLIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQIEQDIAAGMERWQAIIEA 958

Query: 974  SLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHV 1033
            ++ R RP+ + A+  +L MIPL   +F+ PMAV IM GL  ATVLTL+ +P LY  +  V
Sbjct: 959  TVRRFRPIVLTALAAVLAMIPLSRSVFYGPMAVAIMGGLIVATVLTLLFLPALYAAWFRV 1018

Query: 1034 K 1034
            K
Sbjct: 1019 K 1019