Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1053 a.a., cation efflux system protein from Pseudomonas putida KT2440

 Score =  284 bits (727), Expect = 2e-80
 Identities = 259/1063 (24%), Positives = 479/1063 (45%), Gaps = 80/1063 (7%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            +  + I  R++  +  LI    G  ++  L     P  T     + T+ PG +P + E+ 
Sbjct: 5    IIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            +T+P+E A+  L  + +  S+S  GLSQ+TV  K+        Q+ +E   ++   K  L
Sbjct: 65   ITFPVETAMAGLPGLQQTRSLSRSGLSQVTVIFKDGTDIFFARQLINE---RLQVAKEQL 121

Query: 142  PPGVNPPL--VIDDFGDVYGILLAVTGEGYSYKE------------LLDYVDYLRRELEL 187
            P GV   +  V    G+++  L  V  E  + KE            + D++  ++ +L  
Sbjct: 122  PEGVEAVMGPVSTGLGEIF--LWTVEAEDGAVKEDGTPYTPTDLRVIQDWI--IKPQLRN 177

Query: 188  IDGVSKVSVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIR 247
            + GV++++  G   +Q  +    KR++T  ++   +   L + N    AG I    E + 
Sbjct: 178  VPGVAEINTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYIERNGEQLL 237

Query: 248  IHPTGEFDDVEKLGDLIL-SERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGV 306
            I   G+  ++E + ++++ S  GA   I +  VA+V  G  E+ +   T NG+  +   V
Sbjct: 238  IRAPGQVGNIEDIANIVITSVDGAP--IRISSVADVSIGK-ELRTGAATENGREVVLGTV 294

Query: 307  SFAQGVNVVEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIV 366
                G N   V Q    +LA++    P G+    VY +   V+K+++    +L +   +V
Sbjct: 295  FMLIGENSRTVSQAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILV 354

Query: 367  IIVLLFFMG-LRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIV 425
            I +L  F+G +R+ L+  +++ L++L TF  M   K+    +SLGAL    G++VD A+V
Sbjct: 355  IAILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLGAL--DFGIIVDGAVV 412

Query: 426  VVEGI---LIGTQKGRTRLQAATD-------IVTQTKWPLLGATVIAVTAFAPIGLSEDA 475
            +VE     L   Q    R+   T+          + + PL+   +I +  + PI      
Sbjct: 413  IVENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGV 472

Query: 476  TGEYCGTLFTVLLISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRR 535
             G+    +   ++++L+ +   +++  P    +F  G+      EE         + Y  
Sbjct: 473  EGKMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVK----EEEGVVMRTARLRYEP 528

Query: 536  FLEFCMRRAWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDA 595
             L++ +    +     V  +  S    +++   F PS +   F +      GT +  +  
Sbjct: 529  VLQWVLGHRNIAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSLTQSVE 588

Query: 596  ILLELEKWLSAQ-ESVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVTDY------- 647
            +   LEK + AQ   V+ +   +G       +   P    A+   I  +  D        
Sbjct: 589  MQQRLEKAVIAQVPEVERMFARSGTA----EIASDPMPPNASDAYIMLKPQDQWPNPKKP 644

Query: 648  -QQLAALMARFRAHLDARYPQINYKLKQI------ELGPGGGAKIEARIVGSDPTVLRSI 700
              +L A + +  A +    P  NY+L Q       EL  G  + +  ++ G D  VL + 
Sbjct: 645  RDELIAEVQKAAAGV----PGSNYELSQPIQLRFNELISGVRSDVAVKVFGDDMDVLNNT 700

Query: 701  AAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTI 760
            A ++   + A PG+  ++ +      VL    +  +A RYG+  ADV   +A++  G+  
Sbjct: 701  ANKIAAALKAVPGSSEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQA 760

Query: 761  GVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSE-------YIPLQQVTLGYEMR 813
            G   +G     +V RLPE  R D+  +  + I  PA +        +IPL QV    +++
Sbjct: 761  GTLYEGDRRFDMVVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVA-NLDLQ 819

Query: 814  WEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESS 873
                 I R+N KR++ V A+  + G +  + +++      + + +P GY+  WGG++E  
Sbjct: 820  LGPNQISRENGKRLVIVSAN--VRGRDLGSFVEEATASLDKKVQIPAGYWTTWGGQFEQL 877

Query: 874  GDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFM 933
              A   L   +P+  L +  +   +FN++K+ ++V+  +P A+ G    L   + P    
Sbjct: 878  QSAAKRLQIVVPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSIS 937

Query: 934  ALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMI 993
            A +GF++LSG+ + NG+V++  I      G+    AV + +L+R+RPV M A+   LG I
Sbjct: 938  AGVGFIALSGVAVLNGLVMIAFIRGLREEGRTLRQAVDEGALTRLRPVLMTALVASLGFI 997

Query: 994  PLLPDI-----FFRPMAVTIMFGLGFATVLTLIVVPVLYRLFH 1031
            P+           RP+A  ++ G+  +T LTL+V+P LY   H
Sbjct: 998  PMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYHWAH 1040



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 876  AKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMAL 935
            A A++ K +  G + +  I      +++ +LI  + +PL+++   TG+         M+L
Sbjct: 339  AIATVKKNLVEGAILVIAILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSL 398

Query: 936  LGFLSLSGMLLKNGIVLLDQI----------EIEMHSGKDPYLAVVDASLSRVRPVCMAA 985
             G L   G+++   +V+++               M +  + +  V  A+    RP+    
Sbjct: 399  -GALDF-GIIVDGAVVIVENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQ 456

Query: 986  VTTILGMIPL-----LPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            +  ++  +P+     +    F PMA T++  L  A VL++  VP    +F   KV +
Sbjct: 457  LIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKE 513