Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1025 a.a., Cation/multidrug efflux pump from Enterobacter asburiae PDN3

 Score =  493 bits (1268), Expect = e-143
 Identities = 319/1023 (31%), Positives = 521/1023 (50%), Gaps = 21/1023 (2%)

Query: 12   TPPENNENQGVAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYP 71
            T PE   N  ++A+ + N+ +     L+ +  G   +  L R EDPAFTIK A+V   +P
Sbjct: 3    TGPEAKFN--LSAWALKNQQMVSFFMLLVIAMGVFCYEKLPRNEDPAFTIKTAVVSAQWP 60

Query: 72   GATPQQVEEEVTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELR 131
            GA+       +T  LEK +Q+  ++D + S +  G + I V ++++  P  +P IW ++R
Sbjct: 61   GASVADTTRLLTDTLEKKLQETPWLDYLESETRAGRTVIHVNLRDDTPPQSVPDIWYQVR 120

Query: 132  RKVNDLKGALPPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGV 191
            +K+ D+  +LP GV  P V D+F D +G + A   EG++ +E+ D V+ +RREL  +  +
Sbjct: 121  KKMQDIAPSLPDGVQGPAVDDEFDDTFGTIYAFIPEGFTLREVRDRVETIRRELMSLPDM 180

Query: 192  SKVSVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPT 251
             K ++ G+QQEQ  +  S  R++ +G+  Q V + L  QN V  AG +R   E + I  +
Sbjct: 181  GKTTLLGEQQEQWVLAFSPARLAGMGLDIQAVADALRAQNAVVPAGTMRTEKENMAIKVS 240

Query: 252  GEFDDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQG 311
            G     E L  + L        I L D+A + R   E P+     NG+ A+ + VS A  
Sbjct: 241  GALTTEESLRAVTLHVNNRY--IPLTDIATITREIAEPPAPAYRVNGRPAIGLAVSMAPT 298

Query: 312  VNVVEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLL 371
             N++  G   + R+A L    P GI++ +V  Q   V  + SGF+  L +AV IV+ V  
Sbjct: 299  GNMLRFGAALNARMAALSAGLPHGIEMVKVADQSAVVSDAASGFIRVLIEAVIIVLAVSF 358

Query: 372  FFMGLRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGIL 431
              +GLR+GL++   + L +  TF  M    I LQRISLGAL+IALG+LVD+A++ VE ++
Sbjct: 359  VSLGLRAGLVVATAIPLVLAMTFAGMMLAGIGLQRISLGALIIALGLLVDDAMIAVETMV 418

Query: 432  IGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISL 491
               + G +R  AAT     T +P+L  T++ +  F P+G +  + GEYC +LF V+LI+L
Sbjct: 419  SRLEAGDSRRLAATHAFKTTAFPMLTGTLVMIAGFIPVGFAASSAGEYCFSLFAVVLIAL 478

Query: 492  MLSWFTAISLTPFFADLFFRGQKAP-ASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGV 550
            + SW  AI  +P         +  P A+G       G I   Y R L   +R    T+ +
Sbjct: 479  LCSWAVAILFSPLTGTWLLPEKVRPHAAG------PGRIARGYGRLLRLALRHRLATVLI 532

Query: 551  LVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESV 610
             +  L  S YG T ++  FFP+S  P  +V + +P       T   + +LEK L++  ++
Sbjct: 533  ALSALGLSAYGTTFMQGEFFPASDRPELLVSLTLPANASQPETLREVEKLEKALASNGNI 592

Query: 611  DSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINY 670
            D  +T  G G  RF L            ++     D +    L A+    L  ++  I  
Sbjct: 593  DRYSTYVGSGAIRFYLPMDVLLENENIAQMVVVAKDLEARDRLHAQLNRILATQFSDIIT 652

Query: 671  KLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEP 730
            ++  +ELGP  G  I+ R+ G D   +R+ A ++ D +   P + ++     E  +V+  
Sbjct: 653  RVSPLELGPPVGWPIKYRVSGPDYLQVRAFANRLTDAIGQSPYSRDVNQTAGEPERVITL 712

Query: 731  QFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGM 790
            + N++ AR  GI+   +   L   +SG  +   RD   L+ +V R  ++ R     +  +
Sbjct: 713  EVNQTAARAAGISSESLARTLNTVWSGSVVTSIRDNDRLVDVVLRATDDARHSTATLSSL 772

Query: 791  KIWSPALSEYIPLQQVTLGYEMRW--EDPLIVRKNRKRMLTVMADPDLLGEETAATLQQR 848
             I      + IPL  V       W  +DP+I R+ R   +TV    DL  E  A  +   
Sbjct: 773  TIQGND-GKKIPLSAVATPV---WGVDDPVIWRRQRVPFITVQT--DLAPEMKAEAVSAA 826

Query: 849  LQPQIEAI--PLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESL 906
            L+P ++ +   LP GY +E GG    S    +S+F  +P+  + M L+ +         L
Sbjct: 827  LRPAVDRLRASLPAGYSIEEGGAVAESDKGNSSVFTVLPVTLVLMLLLLMLQLRRYSRML 886

Query: 907  IVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDP 966
            +  L  P  + G+   +L   TP GF+ALLG ++L+GM+++N ++L+ +++  +  G   
Sbjct: 887  LALLMAPFGLPGIVLAMLPGGTPMGFVALLGVIALAGMIVRNAVILISEVDSNLAQGMAN 946

Query: 967  YLAVVDASLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVL 1026
              A++ A+  R RP+C+ A   ILGMIP+   +F+ PMA  I+ GL  AT++TL V+P  
Sbjct: 947  DAAIMAAAEHRARPICLTACAAILGMIPISHQVFWGPMAYAIIGGLLVATLVTLTVLPAS 1006

Query: 1027 YRL 1029
            + L
Sbjct: 1007 FSL 1009