Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  546 bits (1408), Expect = e-159
 Identities = 315/1016 (31%), Positives = 543/1016 (53%), Gaps = 10/1016 (0%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++A  +  R I+  +  +  + G  AFF LGR EDP FTIK   ++T++PGAT Q+++++
Sbjct: 8    LSALAVRERAITLFLIFLIFVAGVLAFFQLGRAEDPPFTIKQMTIITAWPGATAQEMQDQ 67

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            V  PLEK +Q+L + D   + +  GL+   +++K++  P ++ + + + R+K+ D    L
Sbjct: 68   VAEPLEKRLQELRWYDRTETYTRPGLAFTMLSLKDSAPPSEVQEEFYQTRKKMGDEAKKL 127

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            P GV  P++ D++ DV   L A+  +G   + L+   + LR++L  + GV KV++ G+Q 
Sbjct: 128  PAGVVGPIINDEYADVTFALFALKAKGEPQRLLVRDAEALRQQLLHVPGVKKVNIIGEQP 187

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E++F+  S  R++TLG++PQ +F  L+ QN+++ AG+I      + +   G FD++EK+ 
Sbjct: 188  ERIFVSFSHDRLATLGVTPQDIFAALNNQNVLTPAGSIETKGPQVFVRVDGAFDNLEKIR 247

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
               +  +G    + L DVA V+RGY +  + ++  NG+ AL +GV      N +++GQ  
Sbjct: 248  QTPIVAQGR--TLKLSDVATVERGYEDPSTFMVRNNGEPALLLGVVMRDDWNGLKLGQAL 305

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            +  +  +    P+G+ +++V  Q   +  +V  F+V    A+ +V++V    MG R G++
Sbjct: 306  EAEVTNINATLPLGMTLSKVTDQAVNISSAVDEFMVKFFVALLVVMMVCFLSMGWRVGIV 365

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            +   + LT+   F+ M     +  RI+LG+L++ALG+LVD+AI+ +E +++  ++G +R+
Sbjct: 366  VAAAVPLTLAAVFVIMAASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYSRI 425

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +A+    + T  P+L  T++    F P G +    GEY   +F ++ I+L+ SW  A++ 
Sbjct: 426  KASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWVVAVAF 485

Query: 502  TPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYG 561
            TP+         K    G ++  Y    +  +R+ L   + R W+  G ++     S+ G
Sbjct: 486  TPYLGVKMLPDIKKVEGGHDA-IYNTRNYNRFRQVLGHVIARKWIVAGTVITLFVVSVLG 544

Query: 562  FTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGL 621
               VK+ FFP+S  P  +V+V MP GT I  T     ++E WL+ Q+    VT+  G+G 
Sbjct: 545  MGAVKKQFFPTSDRPEVLVEVQMPYGTSIEQTSIATAKVEAWLAQQKEASIVTSYIGQGA 604

Query: 622  QRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFR-AHLDARYPQINYKLKQIELGPG 680
             RF L  SPE    ++ +I     + ++   L  R R A      P+   ++ QI  GP 
Sbjct: 605  PRFFLAMSPELPDPSFAKIVVLAGNDKERETLKFRLREAIAGGLAPEAQVRVTQIVFGPP 664

Query: 681  GGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRY 740
                +  R++G DP  LR+IA +V  VM A P    +  DW  R   L    N+ + +  
Sbjct: 665  SPFPVAYRVMGPDPDKLRAIADEVGTVMRASPMMRTVNTDWGPRVPTLHFTLNQDRLQAV 724

Query: 741  GITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEY 800
            G+T   V   L    SG  +   R+    + +V R   + R+D   I    +   A  + 
Sbjct: 725  GLTSNSVSSQLQFLLSGIPLTEVREDIRSVQVVGRAAGDIRLDPARIADFTLVGSA-GQR 783

Query: 801  IPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMAD--PDLLGEETAATLQQRLQPQIEAIPL 858
            IPL QV    ++R EDP++ R++R   +TV  D    L   + +  +  +LQP I+   L
Sbjct: 784  IPLSQVG-SVDVRMEDPILRRRDRTPTITVRGDIAEGLQPPDVSTAVMTQLQPIIDR--L 840

Query: 859  PPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIG 918
            P GY +E  G  E S  A  ++    P+      LI +    S+   ++V+LT PL +IG
Sbjct: 841  PSGYRIEQAGSIEESAKATEAMLPLFPIMIALTLLIIILQVRSMAAMVMVFLTSPLGLIG 900

Query: 919  VTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRV 978
            V   LL    PFG  AL+G ++LSG+L++N ++L+ QI      G DP+ AVV+A++ R 
Sbjct: 901  VVPTLLLFQQPFGINALVGLIALSGILMRNTLILIGQIHHNEQEGLDPFRAVVEATVQRA 960

Query: 979  RPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
            RPV + A+  IL  IPL   +F+  +A T++ G    TVLTL+ +P +Y ++  ++
Sbjct: 961  RPVILTALAAILAFIPLTHSVFWGTLAYTLIGGTLAGTVLTLVFLPAMYSIWFKIR 1016