Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1016 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  535 bits (1379), Expect = e-156
 Identities = 310/1005 (30%), Positives = 543/1005 (54%), Gaps = 16/1005 (1%)

Query: 27   INNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPL 86
            + +R + W   +I  + G  ++  LGR EDPAFTIK  ++   +PGAT +++  +VT  +
Sbjct: 11   LEHRSLVWYFIIISAVIGFFSYQELGREEDPAFTIKTMVIQAQWPGATAEEMTNQVTDRI 70

Query: 87   EKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVN 146
            EK +Q++  +D   S ++ G + I V +K +    ++  +W  +R  + D++G  P G+ 
Sbjct: 71   EKKLQEIDTLDHTRSQTTAGQTIIFVDLKEDTPSKEVRAVWQRVRNMMADIQGNFPVGIQ 130

Query: 147  PPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFI 206
             P + D F DV+G + A T +G S ++L DYV+ +++++  I  V +V + G Q E +++
Sbjct: 131  GPFLNDRFDDVFGNIYAFTRDGISQRQLRDYVNDVQKKVLTIPNVGRVEILGAQDEVIYL 190

Query: 207  EISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILS 266
            E + ++ + LG+S   V   L  QN V+ +G +  GS+ I +   G F   + L  + L 
Sbjct: 191  EFNPRKSAELGVSRSDVIAALQAQNAVTASGFMEAGSDRIALRVDGGFASEQSLRHINL- 249

Query: 267  ERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLA 326
             R       L DV  + RGYV+ P+++  ++GK A+ + V    G N++  G   DR + 
Sbjct: 250  -RINNRFFPLTDVVNITRGYVDPPTSLFRYDGKPAIALAVGIKSGSNLLVFGHALDRTID 308

Query: 327  ELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLIL 386
             + +  P G+ +++V  QP  VD++VSGF  +L +AV IV+ +    +G+R+GL++ + +
Sbjct: 309  HIMHDLPAGVSVSKVSDQPAIVDEAVSGFTRALFEAVVIVLAISFISLGVRAGLVVAISI 368

Query: 387  LLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATD 446
             L +  TF+ M Y  I LQRISLGAL+IALG+LVD+A++  E ++   + G +  +AAT 
Sbjct: 369  PLVLAITFLVMYYSGISLQRISLGALIIALGLLVDDAMIATEMMVARLEMGDSLRKAATH 428

Query: 447  IVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFA 506
            + T T +P+L  T++ V +F P+G +    GE+  TLF V+ +SL++SW  A+ + P   
Sbjct: 429  VYTSTAFPMLTGTLVTVASFIPVGFNASNAGEFLFTLFVVIAVSLIVSWVVAVLIAPLLG 488

Query: 507  DLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKVK 566
                     P +  +   +Q      + R L++C+R  WLT+G        S+   + V+
Sbjct: 489  VALL-----PKTITKQAEHQSRTDHAFSRMLQYCLRHRWLTIGSACAAFIVSVLCMSLVQ 543

Query: 567  QAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELE-KWLSAQESVDSVTTTAGKGLQRFM 625
              FFPSS  P  +VD  +P+   I  T   + + E + L     VD  ++  G G  RF+
Sbjct: 544  HQFFPSSDRPELIVDWNLPQNGSIEETSRQMAQFEQEKLQNNPDVDHWSSYIGTGAPRFI 603

Query: 626  LTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKI 685
            L++  + S  + G++     D +    L   +RA+L   +P  +  +K +++GP  G  +
Sbjct: 604  LSFDVQPSSVSLGQMVIVAKDIKTRDRLQKEYRAYLAHTFPGTDAYVKLLDVGPPVGKPV 663

Query: 686  EARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKA 745
            + R+ G D   +R+ A ++  V+  +P   N+  DW E  +V++    + +AR+ G++  
Sbjct: 664  QYRVAGPDIQTVRTEAHKLAAVIGQNPSLTNLAFDWNEPARVVKVNVLQDKARQMGVSSQ 723

Query: 746  DVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQ 805
             + + L     G+ +   RD   L+ ++ R   ++R  +  +  +++        +PL  
Sbjct: 724  AIAQALNGLTGGEVVTQVRDDIYLINVLWRGQAKDRGSVDALLDLQL-DGNNGRQVPLSS 782

Query: 806  V-TLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAI--PLPPGY 862
            V T  Y++  E P I R++R   +T+ A   + G+   AT+ Q L+P +E +   LP GY
Sbjct: 783  VATFSYQL--EQPTIWRRDRAAAITLKA--GVSGDIQPATIVQALEPNVEVLRQSLPQGY 838

Query: 863  FLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTG 922
             +E GG  E S  A+A + K +P+    +  I +    S     +V+   PLA+IGV   
Sbjct: 839  TIETGGAVEESAKAQAPIVKVVPVMLFVIATILMIQLQSFHRLFLVFSVAPLALIGVVAA 898

Query: 923  LLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVC 982
            LL  + P GF+A+LG L+L G+L++N ++L+  I+     G  P+ AVV A+  R+RP+ 
Sbjct: 899  LLLSHAPLGFVAILGVLALVGILIRNSVILVVHIDTLRAEGISPWQAVVQATEHRMRPIM 958

Query: 983  MAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLY 1027
            + A    L +IP+  +IF+ PMA  +M G+   TVLTL+ +P LY
Sbjct: 959  LTAAAATLALIPIAREIFWGPMAYAMMGGIIVGTVLTLLFLPALY 1003