Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1011 a.a., efflux RND transporter permease subunit from Bacteroides stercoris CC31F

 Score =  631 bits (1628), Expect = 0.0
 Identities = 355/1012 (35%), Positives = 569/1012 (56%), Gaps = 9/1012 (0%)

Query: 25   YFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTY 84
            YF++ + ++ ++ ++ L GG  A+  +G+LED  FTIK A+V+T YPGA+P +V+ +VT 
Sbjct: 6    YFLSKKPVTILLLVLVLAGGLLAYVKMGKLEDAPFTIKQALVLTPYPGASPSEVQSQVTD 65

Query: 85   PLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPG 144
             LE++IQ L  +  + + +  GLS+ITV +K     D++ Q+WD+LRRKV+D++  LP G
Sbjct: 66   VLEESIQALGELYYLKTENRAGLSKITVYVKKETRADEMQQLWDKLRRKVSDVQSKLPEG 125

Query: 145  VNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQV 204
              P +V DDFGDV G+   +TG G+SY+EL D    ++ E+  +  V+KV + G Q   +
Sbjct: 126  AGPSVVNDDFGDVLGVFYGLTGSGHSYRELEDEAKLIKNEILKVKDVAKVEIYGTQTPTI 185

Query: 205  FIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDL- 263
             I +S   ++  GI+   +      QN V DAG I +GS  +RI  TG F  ++ + +L 
Sbjct: 186  DISVSPSVMARSGITMTDIARAFEAQNKVVDAGGIDVGSNRLRIESTGNFYSLDDIRNLT 245

Query: 264  ILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDR 323
            I+S  G      L D+  ++  Y    SN++  NG+ A+ + +S     NVV++      
Sbjct: 246  IVSSTGEH--FRLADITRIEESYQTPASNLMRINGQPAVGIAISTVPTGNVVDMAAAVKE 303

Query: 324  RLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIG 383
             L ++    P G ++  +Y Q  E   +  GF+++L  +V  V+ +LLFF+G ++GLLIG
Sbjct: 304  SLQQMSGSMPEGFELVTLYDQGYESAVANQGFILNLIISVLTVVAILLFFIGFKNGLLIG 363

Query: 384  LILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQA 443
              L+ ++  T I M    I LQR+SL A++IA+GMLVDNAIVV +  L+  Q+G  +  A
Sbjct: 364  SGLVFSIFATLIVMLCTDIALQRMSLAAIIIAMGMLVDNAIVVSDSALVNMQRGMRKRVA 423

Query: 444  ATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTP 503
                 + T  PLL ATVIA+  F PI  S   TGE   +L  V+ +SLM SW  A++ TP
Sbjct: 424  IMRACSSTALPLLAATVIAILTFLPIYFSPHITGELLSSLVIVIGVSLMFSWVFALTQTP 483

Query: 504  FFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFT 563
            FF   F R  +      +S  + G  + ++RR L + ++  + T+  +VL L  S + F 
Sbjct: 484  FFIQEFVRRPRPEEL--KSALFDGKYYNMFRRSLHWVIKHRYATIACMVLLLVLSAWSFK 541

Query: 564  KVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQR 623
             + + F P+     F VDVW+PEG++I  T  +  E+ +++      + V+T  G+   R
Sbjct: 542  FIPKVFVPALDKQYFTVDVWLPEGSNIDETGKLAEEMAEYIRTHGEAEMVSTFIGRTPPR 601

Query: 624  FMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGA 683
            + L+       + Y ++  +    ++   L +  +  +  ++P    K+ + EL P   A
Sbjct: 602  YYLSNVAFGPQSNYTQLLVKCHTSEESRRLNSALQDSIRLKFPGPLIKVNKFELSPLTEA 661

Query: 684  KIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGIT 743
             IEAR +G DP VL S+  Q +++M  +P   + R++W     +L   ++  +A   GIT
Sbjct: 662  VIEARFLGPDPAVLDSLVGQAIEIMRRNPKVADARNEWGNMALMLRLVYDPVKAGELGIT 721

Query: 744  KADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPL 803
            KA + + +     G  +G+YRD    +P++ +    +  D  ++    +W+   S   PL
Sbjct: 722  KAQMMQSVKSISDGVPVGIYRDNEKKVPVLLKSEGYDITDAASLGNFSVWNGERSA--PL 779

Query: 804  QQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYF 863
              VT   E  WE P +   NR+  +  M    +    T A +   ++ +IEA+PLPPGY 
Sbjct: 780  SLVTERIETTWEFPQMRTYNRQLSMAAMCG--VKPGHTMAEVHGEIRSEIEAMPLPPGYT 837

Query: 864  LEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGL 923
              W  +Y+  G+A  ++ K  PL +L + +I V LF + ++ +I+   +PL++IGV  G+
Sbjct: 838  FFWDSQYKDQGEAMEAIAKYFPLAFLMLIVILVALFGNFRQPIIILCILPLSLIGVAVGM 897

Query: 924  LALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCM 983
            L     FGF  + G+L L GM++KN IVL+D+I I+   G   Y AV+++++SR RPV M
Sbjct: 898  LLTGFDFGFFPIAGWLGLLGMIIKNVIVLIDEINIQRREGVPAYTAVIESTVSRTRPVLM 957

Query: 984  AAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKV 1035
            AA TTILGM+PLL DI F  MA TI+FGL FAT+LTL V P LY LF+ +K+
Sbjct: 958  AATTTILGMVPLLFDIAFGGMAATIIFGLTFATLLTLFVTPALYILFYRIKI 1009