Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 36/162 (22%)

Query: 46  LVHRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSK---------------- 89
           +VHRLD+ TSG++++AR       +    A R+V++ YLAIG K                
Sbjct: 154 IVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAIGHKPWVGAAARQVDAPIGR 213

Query: 90  KPKKKQGLICGDMER----SRRSSWKLVNSQENPAITQFFSAAAATGERLFLCKPHTGKT 145
            P+ +  +   D+ER    + R+  + ++S     + +              C   TG+T
Sbjct: 214 DPRNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVR--------------CTLETGRT 259

Query: 146 HQIRVALKSIGSAIVGDPIYNTADE--SDRGYLHAFALRFTY 185
           HQIRV + SIG  +VGD +Y  A      R  LHAF L F +
Sbjct: 260 HQIRVHMASIGHPLVGDALYGGAPAVGLSRQALHAFRLAFVH 301