Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

 Score = 70.9 bits (172), Expect = 3e-17
 Identities = 68/218 (31%), Positives = 98/218 (44%), Gaps = 39/218 (17%)

Query: 2   FDILFTHPDFLLINKHPNVSVHKDDGDTM-LLQEVAT-QTGDGQLYLVHRLDKMTSGILL 59
           F +L      L I+K   V+VH   G +  +++++ T + G   L LVHRLD+ TSGILL
Sbjct: 119 FPVLLEDDAVLAIDKPAGVAVHGGSGVSFGVIEQLRTARPGAKFLELVHRLDRETSGILL 178

Query: 60  LARNATAASELSQGFAKRKVEKFYLAI--GSKKPKKK------------QGLICGDMERS 105
           +A+  +A   L   F +R+  K YLA+  G+    KK             G   G  ER 
Sbjct: 179 VAKKRSALVALQDQFRERETGKTYLALVEGAWPANKKVLDAPLAKYLLPDGSGAGAGERR 238

Query: 106 RRSSWKLVNSQENP----------AITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSI 155
            R     V ++++P           + +      AT   L      TG+THQIRV L S 
Sbjct: 239 VR-----VVAKDHPDAMRAVTLVRVLARLTLPGDATPMSLLAVTIKTGRTHQIRVHLASA 293

Query: 156 GSAIVGDPIYNTADES--------DRGYLHAFALRFTY 185
           G  I GD  Y  +D           R +LHA+ L+F +
Sbjct: 294 GHPIAGDDKYGESDRQRALQKIGLKRMFLHAWRLQFNH 331