Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Sphingobium sp. HT1-2

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 13/184 (7%)

Query: 12  LLINKHPNVSVH---KDDGDTMLLQEVATQTGDGQLYLVHRLDKMTSGILLLARNATAAS 68
           ++INK P ++     K D     L +      + +  LVHRLDK TSG LLLAR++ +A+
Sbjct: 194 IVINKPPGLATQGGTKTDEHVDRLLDGLIFDAESRPKLVHRLDKDTSGALLLARSSRSAA 253

Query: 69  ELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWKLVNSQEN---PAITQFF 125
             ++ F+ R   K Y AI    P    G+I   + +   +  + ++  E    PA T++ 
Sbjct: 254 HFAKAFSSRTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEKMHVDEEEGLPARTRYR 313

Query: 126 SAAAATGERLFL-CKPHTGKTHQIRVALKSIGSAIVGDPIYNTADE------SDRGYLHA 178
               A     ++  +P+TG+THQ+RV + +IG  +VGD  Y   D       S + +LHA
Sbjct: 314 VIERAGNRAAWVELQPYTGRTHQLRVHMAAIGHPLVGDGKYGGKDSFLSGSISRKMHLHA 373

Query: 179 FALR 182
             +R
Sbjct: 374 RRIR 377