Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., 23S rRNA pseudouridine synthase (NCBI) from Escherichia coli BW25113

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDGD------TMLLQEVATQTGDGQLYLVHRLDKMTSG 56
           DI++   D ++INK  ++ VH   G+        LL          +  +VHRLDK T+G
Sbjct: 85  DIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTG 144

Query: 57  ILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERS-RRSSWKLVNS 115
           ++++A+   A + L +   +R++ + Y A+         G +   + R   + +   V+ 
Sbjct: 145 LMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTKRTHMAVHP 203

Query: 116 QENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADESDRGY 175
              PA+T +              +  TG+THQIRV +  I   +VGDP+Y       +G 
Sbjct: 204 MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA 263

Query: 176 LHAF 179
             AF
Sbjct: 264 SEAF 267