Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridine(955,2504,2580) synthase from Escherichia coli BL21

 Score = 70.5 bits (171), Expect = 4e-17
 Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 17/200 (8%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTMLLQEV--ATQTGDGQLYLVHRLDKMTSGILLLA 61
           IL+     L++NK    +VH   G +  + E   A +     L LVHRLD+ TSG+LL+A
Sbjct: 95  ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVA 154

Query: 62  RNATAASELSQGFAKRKVEKFYLAI----GSKKPKKKQGLICGDMERSRRSSWKLVNSQE 117
           +  +A   L +   ++ ++K YLA+         K  Q  +  ++ +S     + V+ + 
Sbjct: 155 KKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR-VSQEG 213

Query: 118 NPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTADES------ 171
            P+ T+F          L  C P TG+THQIRV  +  G  I  D  Y   +        
Sbjct: 214 KPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA 273

Query: 172 ----DRGYLHAFALRFTYQG 187
               +R +LHA AL+FT+ G
Sbjct: 274 GTGLNRLFLHAAALKFTHPG 293