Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., Ribosomal large subunit pseudouridine synthase A from Alteromonas macleodii MIT1002

 Score =  167 bits (423), Expect = 2e-46
 Identities = 101/243 (41%), Positives = 138/243 (56%), Gaps = 23/243 (9%)

Query: 4   ILFTHPDFLLINKHPNVSVHKDDGDTMLLQEVAT----------------QTGDGQLYLV 47
           +LF + D +++NK   +++H    +  + + +A                 Q    +L+L 
Sbjct: 6   VLFENTDLIIVNKPIGIAMHDATSEADVRENIAENGEPEKIDGIVTRLKKQLAVTELHLC 65

Query: 48  HRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRR 107
           HRLD  TSG L LA+NA  A E+ + F+ R+V K+YLA+   KPKKKQG+I GDM+  R 
Sbjct: 66  HRLDTGTSGCLCLAKNAAVAGEIGELFSSRRVSKYYLALSDHKPKKKQGMIMGDMKNRRG 125

Query: 108 SSWKLVNSQENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNT 167
               L+ + ENPAITQFFS+AA  G R F+ KPH+GKTHQIRVALKSIG+ I+GD +Y  
Sbjct: 126 GQRILLKTTENPAITQFFSSAAKPGTRGFIVKPHSGKTHQIRVALKSIGAPILGDTLYG- 184

Query: 168 ADESDRGYLHAFALRFTY-QGEVYQWLCDPRQFSHLGQKWHEEAVNQGIENWLSPWDLPW 226
            + SDR YLHA+ LR     GE    L     F   G+  +E  V        +P   PW
Sbjct: 185 GETSDRLYLHAWHLRLPLSSGE----LSVTAPFD-TGEVINEADVQTWYNGLNAPGTYPW 239

Query: 227 PAL 229
           P+L
Sbjct: 240 PSL 242