Pairwise Alignments

Query, 235 a.a., TIGR01621 family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score = 67.8 bits (164), Expect = 3e-16
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 3   DILFTHPDFLLINKHPNVSVHKDDGDTM--LLQEVATQTGDG--------QLYLVHRLDK 52
           D+ +   D +++ K   + VH   G+    L+  +    GD         +  +VHRLDK
Sbjct: 91  DVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDK 150

Query: 53  MTSGILLLARNATAASELSQGFAKR----KVEKFYLAIGSKKPKKKQGLICGDMERSRRS 108
            TSG++++A+N  A   L+  FA       +E+ Y A+   +P+  +G +   + R    
Sbjct: 151 ETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGTDR 210

Query: 109 SWKLVNSQEN----PAITQFF-------SAAAATGERLFLCKPHTGKTHQIRVALKSIGS 157
           + + V ++++     AIT +           A+    +  C+  TG+THQIRV +  IG 
Sbjct: 211 TKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGH 270

Query: 158 AIVGDPIY----------------NTADESDRGYLHAFALRFTY--QGEVYQWLCD 195
            ++GDP Y                +T +   R  LHA+ L F +   GEV ++  D
Sbjct: 271 PLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETD 326