Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., fused transporter subunits of ABC superfamily: membrane components (RefSeq) from Escherichia coli BW25113

 Score =  226 bits (575), Expect = 2e-63
 Identities = 171/538 (31%), Positives = 262/538 (48%), Gaps = 54/538 (10%)

Query: 7   WGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTL 66
           W  + +  AP++P  A  LIS     P L   H  WQ      Q   +  ALL ++ ST 
Sbjct: 14  WAMVAVIYAPLIPA-ALTLIS-----PALSLTH--WQALFADPQ---LPQALLATLVSTT 62

Query: 67  FSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLY 126
            +   ALL++  ++   W  P+W+R+   L  LLA+PHVAFA     LFA  G L     
Sbjct: 63  IAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFP 122

Query: 127 YGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLG 186
           Y     D            + IGL + LA+KE  F+L I   +L +  L +  ++  SLG
Sbjct: 123 YFTPPMDR-----------FGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLG 171

Query: 187 YSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPD 246
           YS  Q    ++ P     +   + A+ A+++SVVD +++LGP  PPT +V+ WQW  + D
Sbjct: 172 YSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGD 231

Query: 247 LNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAW----QSSGRSHFPLPHKSILT 302
           ++   + A  +++L+LL    L A V L +L  R +R          +   PL   + L 
Sbjct: 232 IDQQTKGALASLLLMLL----LAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLA 287

Query: 303 LLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGS 362
           +   ++G +  + L+  LA                   D+       +  S+ + L +  
Sbjct: 288 IFLPLTGVLC-VVLLAILA-------------------DQSTINSEALINSLTMGLVATF 327

Query: 363 LALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAH 422
           +ALLL +L  E+    ++      + LP+LLP L L+ G   L L +        VVW H
Sbjct: 328 IALLLLLLWLEWGPQRRQ----LWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGH 383

Query: 423 TFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISV 482
             +  P +   L   WQ  +S    IA++LG S  +IF+ +K PL+   +L A+AVG +V
Sbjct: 384 LLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAV 443

Query: 483 SLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR 540
            +AQY+PTL LG GR  T+TTEAVALSSG    + A  AL Q LLP + F++  L+ +
Sbjct: 444 GIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAK 501