Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., spermidine/putrescine ABC transporter membrane protein (NCBI) from Escherichia coli BW25113

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 330 FPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQ----EYRLHTQRAIPVY 385
           F T+W      ++  ++L   + S+ +A+ S + A L+G L       YR   +  +   
Sbjct: 42  FTTKWYSLLMNND--SLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGM 99

Query: 386 IIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNF 445
           +  + M+ P + +   + VL +L+  Q   W ++++H  F  P V + +    + ++   
Sbjct: 100 LFVV-MMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRM 158

Query: 446 SKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSL 484
            + A+ LG SE+ I  KI LPL  PA+   W +  ++S+
Sbjct: 159 LEAAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSM 197



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 42/242 (17%)

Query: 40  VSWQGFSQVWQ---------WQGVEYALLLSVTSTLFSTYLALLMSFAILQRFWFHPRWK 90
           ++WQGF+  W           Q  +++L ++V S  F+T +  L + A L R+ F  +  
Sbjct: 37  INWQGFTTKWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVA-LYRYRFRGK-P 94

Query: 91  RIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGL 150
            +   L +++  P +  AI    LF   G     +  GF     SH             +
Sbjct: 95  FVSGMLFVVMMSPDIVMAISLLVLFMLLG-----IQLGFWSLLFSH-------------I 136

Query: 151 TIALALKEVPFILLISLPILQQLNLTKMKMLSAS--LGYSEPQMWWKIVFPQWLRKIRFT 208
           T  L     PF++   + +  +L    ++ML A+  LG SE  +  KI+ P  L      
Sbjct: 137 TFCL-----PFVV---VTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILP--LAMPAVA 186

Query: 209 LFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPDLNLLPRAASGAVVLLLLASIVL 268
              V ++ +S+ D  +V    T P++ +L  + ++   + + P   + A +LL+L+ +++
Sbjct: 187 AGWVLSFTLSMDDV-VVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVMV 245

Query: 269 VA 270
           +A
Sbjct: 246 IA 247