Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 263 a.a., ABC-type spermidine/putrescine transport system, permease component II from Enterobacter asburiae PDN3

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 330 FPTQWTG--QFWYDEWPN---VLHNMETSVLLALGSGSLALLLGILAQ----EYRLHTQR 380
           F   W G    WY    N   +L   + S+ +A+ S + A L+G L       YR   + 
Sbjct: 35  FGINWQGFTTSWYSLLMNNDSLLQAAQHSLTMAIFSATFATLIGSLTAVALYRYRFRGKP 94

Query: 381 AIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQS 440
            +   +  + M+ P + +   + VL +L+  Q   W ++++H  F  P V + +    + 
Sbjct: 95  FVSGMLFVV-MMSPDIVMAISLLVLFMLLGVQLGFWSLLFSHITFCLPFVVVTVFARLKG 153

Query: 441 YNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTT 500
           ++    + A+ LG SE  I  KI LPL  PA+   W +  ++S+   + +  + G     
Sbjct: 154 FDVRMLEAAKDLGASEMIILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPSYEI 213

Query: 501 ITTEAVAL-SSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHR 545
           +  +  ++   G    V A+  +       + FS+ L++    I R
Sbjct: 214 LPLKIYSMVKVGVSPEVNALATI------LLVFSLVLVIASQVIAR 253



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 52/247 (21%)

Query: 40  VSWQGFSQVWQ---------WQGVEYALLLSVTSTLFSTYLALLMSFAILQRFWFHPRWK 90
           ++WQGF+  W           Q  +++L +++ S  F+T +  L + A L R+ F  +  
Sbjct: 37  INWQGFTTSWYSLLMNNDSLLQAAQHSLTMAIFSATFATLIGSLTAVA-LYRYRFRGK-P 94

Query: 91  RIENSLSILLALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWLVHDPYAIGL 150
            +   L +++  P +  AI    LF   G     +  GF     SH             +
Sbjct: 95  FVSGMLFVVMMSPDIVMAISLLVLFMLLG-----VQLGFWSLLFSH-------------I 136

Query: 151 TIALALKEVPFILLISLPILQQLNLTKMKMLSAS--LGYSEPQMWWKIVFPQWLRKIRFT 208
           T  L     PF++   + +  +L    ++ML A+  LG SE  +  KI+ P         
Sbjct: 137 TFCL-----PFVV---VTVFARLKGFDVRMLEAAKDLGASEMIILRKIILP-------LA 181

Query: 209 LFAVAA-----YAISVVDFSLVLGPTTPPTFSVLVWQWFNEPDLNLLPRAASGAVVLLLL 263
           + AVAA     + +S+ D  +V    T P++ +L  + ++   + + P   + A +LL+ 
Sbjct: 182 MPAVAAGWLLSFTLSMDDV-VVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVF 240

Query: 264 ASIVLVA 270
           + ++++A
Sbjct: 241 SLVLVIA 247