Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., Inner membrane ABC transporter permease protein YnjC from Escherichia coli ECRC62

 Score =  228 bits (582), Expect = 3e-64
 Identities = 171/534 (32%), Positives = 262/534 (49%), Gaps = 46/534 (8%)

Query: 7   WGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTL 66
           W  + +  AP++P  A  LIS     P L   H  WQ      Q   + +ALL ++ ST 
Sbjct: 14  WAMVAVIYAPLIPA-ALTLIS-----PALSLTH--WQALFADPQ---LPHALLATLVSTT 62

Query: 67  FSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLY 126
            +   ALL++  ++   W  P+W+R+   L  LLA+PHVAFA     LFA  G L     
Sbjct: 63  IAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFP 122

Query: 127 YGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLG 186
           Y     D            + IGL + LA+KE  F+L I   +L +  L +  ++  SLG
Sbjct: 123 YFTPPMDR-----------FGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLG 171

Query: 187 YSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPD 246
           YS  Q    ++ P     +   + A+ A+++SVVD +++LGP  PPT +V+ WQW  + D
Sbjct: 172 YSRWQCLNWLLLPSVAPSLAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGD 231

Query: 247 LNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSILTLLFT 306
            +   + A  +++L+LL    L A V L +L    +R+W+ +      +   +   L  T
Sbjct: 232 ADQQTKGALASLLLMLL----LAAYVLLSYLL---WRSWRRTIPRVDGIRKPATPLLPGT 284

Query: 307 ISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALL 366
              + +PLT +  +                    D+       +  S+ + L +  +ALL
Sbjct: 285 TLASFLPLTGVLCVVLL-------------AILADQSTINSEALINSLTMGLVATFIALL 331

Query: 367 LGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFA 426
           L +L  E+    ++      + LP+LLP L L+ G   L L +        VVW H  + 
Sbjct: 332 LLLLWLEWGPQRRQ----LWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWV 387

Query: 427 FPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQ 486
            P +   L   WQ  +S    IA++LG S  +IF+ +K PL+   +L A+AVG SVS+AQ
Sbjct: 388 MPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFSVSIAQ 447

Query: 487 YLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR 540
           Y+PTL LG GR  T+TTEAVALSSG    + A  AL Q LLP + F++  L+ +
Sbjct: 448 YMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAK 501