Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., Inner membrane ABC transporter permease protein YnjC from Escherichia coli ECRC102

 Score =  221 bits (563), Expect = 5e-62
 Identities = 177/540 (32%), Positives = 260/540 (48%), Gaps = 58/540 (10%)

Query: 7   WGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTL 66
           W  + +  AP++P  A  LIS     P L   H  WQ      Q   +  ALL ++ ST 
Sbjct: 14  WAMVAVIYAPLIPA-ALTLIS-----PALSLTH--WQALFADPQ---LPQALLATLVSTT 62

Query: 67  FSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLY 126
            +   ALL++  ++   W  P+W+R+   L  LLA+PHVAFA     LFA  G    LLY
Sbjct: 63  IAAVGALLIALLVIVALWPGPKWQRMCTRLPWLLAIPHVAFATSALLLFADGG----LLY 118

Query: 127 YGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLG 186
             F              D   IGL   LA+KE  F+L I   +L +  L +  ++  SLG
Sbjct: 119 DYFPYFTPPM-------DKLGIGLGFTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLG 171

Query: 187 YSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPD 246
           YS  Q    ++ P     +   + A+ A+++SVVD +++LGP  PPT +V+ WQW  + D
Sbjct: 172 YSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGD 231

Query: 247 LNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPH-----KSIL 301
            +   + A  +++L+LL    L A V L      GY  W +  R+   +P      K   
Sbjct: 232 ADQQTKGALASLLLMLL----LAAYVLL------GYLLWCTWRRT---IPRVDGVRKPAT 278

Query: 302 TLLFTIS-GAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGS 360
            LL  I+  + +PLT +  +       D                     +  S+ + L +
Sbjct: 279 PLLPGITLASFLPLTSVLCVVLLAILADQSTINSEA-------------LINSLTMGLVA 325

Query: 361 GSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVW 420
             +ALLL +L  E+    ++      + LP+LLP L L+ G   L L +        VVW
Sbjct: 326 TFIALLLLLLWLEWGPQRRQLW----LWLPILLPALPLVAGQYTLALWLNMDGSWTAVVW 381

Query: 421 AHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGI 480
            H  +  P +   L   WQ  +S    IA++LG S  +IF+ +K PL+    L A+AVG 
Sbjct: 382 GHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPTLIAFAVGF 441

Query: 481 SVSLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR 540
           SVS+AQY+PTL LG GR  T+TTEAVALSSG    + A  AL Q LLP + F++  L+ +
Sbjct: 442 SVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAALALWQLLLPLIIFALTALVAK 501