Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., Inner membrane ABC transporter permease protein YnjC from Escherichia fergusonii Becca

 Score =  226 bits (575), Expect = 2e-63
 Identities = 175/538 (32%), Positives = 261/538 (48%), Gaps = 54/538 (10%)

Query: 7   WGFILLCVAPILPGLAGVLISASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTL 66
           W  + +  AP++P  A  LIS     P L   H  WQ      Q   +  ALL ++ ST 
Sbjct: 14  WAMVAVIYAPLIPA-ALTLIS-----PALSLTH--WQALFADPQ---LPQALLATLVSTT 62

Query: 67  FSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLLY 126
            +T  AL ++  ++   W  P+W+ +   L  LLA+PHVAFA     LFA  G    LLY
Sbjct: 63  IATLGALTIALLVIVALWPGPKWQHMCARLPWLLAIPHVAFATSALLLFADGG----LLY 118

Query: 127 YGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLG 186
             F              D   IGL + LA+KE  F+L I   +L +  L +  ++  SLG
Sbjct: 119 DYFPYFTPPM-------DKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLG 171

Query: 187 YSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPD 246
           YS  Q    ++ P     +   + A+ A+++SVVD +++LGP  PPT +V+ WQW  + D
Sbjct: 172 YSRWQCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGD 231

Query: 247 LNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAW----QSSGRSHFPLPHKSILT 302
            +   + A  +++L+LL    L A V L +L  RG+R          +   PL   + L 
Sbjct: 232 ADQQTKGALASLLLMLL----LAAYVLLGYLLWRGWRRTIPRVDGVRKPATPLLPGNTLA 287

Query: 303 LLFTISGAMIPLTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGS 362
               ++G +  + L+  LA                   D+       +  S+ + L +  
Sbjct: 288 SFLPLTGVLC-VVLLAILA-------------------DQSTINSEALINSLTMGLVAAF 327

Query: 363 LALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAH 422
           +ALLL +L  E+    ++      + LP+LLP L L+ G   L L +        VVW H
Sbjct: 328 IALLLLLLWLEWGPQRRQ----LWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGH 383

Query: 423 TFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISV 482
             +  P +   L   WQ  +S    IA++LG S  +IF+ +K PL+    L A+AVG SV
Sbjct: 384 LLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALIAFAVGFSV 443

Query: 483 SLAQYLPTLMLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGR 540
           S+AQY+PTL LG GR  T+TTEAVALSSG    + A  AL Q LLP + F++  L+ +
Sbjct: 444 SIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAK 501