Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 15/213 (7%)

Query: 339 WYDE-------WPNVLHNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPVYIIAL-- 389
           WYD+       W   L N   S+++  G+ +LA +LG LA          +  +++ L  
Sbjct: 53  WYDKVLAASGPWLPALRN---SLIVGTGAMALATVLGTLAALGLARNDLPVRSFLLGLLI 109

Query: 390 -PMLLPQLSLLFGIQVLTLLMASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKI 448
            PM++P +     +  L   +   A    ++ AH     P V + ++   +++++   + 
Sbjct: 110 APMVVPVVISGVAMYFLFARIGLTASYAGLILAHAVLGAPFVVITVTATLRNFDTTLVRA 169

Query: 449 ARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAV-A 507
           A SLG S  + F  + LPL+ P +L         S  + +  L +GG    T+  +    
Sbjct: 170 AYSLGASPVRAFLTVTLPLILPGVLSGGLFAFIFSFDEVVVALFIGGPEQRTLPRQMFDG 229

Query: 508 LSSGYDRRVTAIYALCQALLPFVFFSIALLLGR 540
           +    D  + A+  L    +  VF  +   LGR
Sbjct: 230 IRDTIDPSILAMSTLLVG-VTIVFMGLLARLGR 261