Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)

Query: 335 TGQFWYDEWPNVL----------HNMETSVLLALGSGSLALLLGILAQEYRLHTQRAIPV 384
           TG F +  +  V           + +   VL  LG+  L + L      YR+  +  I  
Sbjct: 53  TGAFGFSNYAEVFTRRFYTVALWNTLVIGVLGMLGACLLGIPLAFCTSRYRIKGRTFIAT 112

Query: 385 YIIALPMLLPQLS-----LLFGIQ-VLTLLMASQAYTW-------WVVWAHTFFAFPLVY 431
           + + +    P +      +LFG    +T L++    +         +V   +   FP +Y
Sbjct: 113 FAVLVLCAPPFIGAYAWIMLFGANGAVTNLLSFAGISLPTIYGIPGIVMVFSLKFFPYIY 172

Query: 432 LALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPALLYAWAVGISVSLAQYLPTL 491
           L       + N ++   A +LG + +Q F KI LPL+FPA+     +   +S+A +    
Sbjct: 173 LMTENALNTINKSYEDAAENLGCTAFQRFRKITLPLVFPAVSTGAIICFVLSIADFGTPA 232

Query: 492 MLGGGRLTTITTEAVALSSGYDRRVTAIYALCQALLPFVFFSIALLLGRMQIHRYRAAQL 551
           +LG G + T++T A A  +  +   T   A+  +++       ALLL R  + + R A  
Sbjct: 233 ILGKG-IRTLSTIAYAQYTS-EMAGTPTMAVTISMVMIAISMAALLLQRHILAKRRYASS 290

Query: 552 TT 553
            T
Sbjct: 291 LT 292



 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 105/521 (20%), Positives = 203/521 (38%), Gaps = 64/521 (12%)

Query: 10  ILLCVAPILPGLAGVLIS----ASGYLPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTST 65
           ILL +  ILP  +   IS     +G      +  V  + F  V  W      L++ V   
Sbjct: 30  ILLAIFLILPIFSVFFISFFDAKTGAFGFSNYAEVFTRRFYTVALWN----TLVIGVLGM 85

Query: 66  LFSTYLALLMSFAILQRFWFHPRWKRIENSLSILLALPHVAFAIGFASLFASTGWLARLL 125
           L +  L + ++F    R+    R      ++ +L A P +  A  +  LF + G +  LL
Sbjct: 86  LGACLLGIPLAFCT-SRYRIKGRTFIATFAVLVLCAPPFIG-AYAWIMLFGANGAVTNLL 143

Query: 126 YYGFELRDNSHEVTWLVHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASL 185
            +        + +          G+ +  +LK  P+I L++   L  +N +  +  + +L
Sbjct: 144 SFAGISLPTIYGIP---------GIVMVFSLKFFPYIYLMTENALNTINKS-YEDAAENL 193

Query: 186 GYSEPQMWWKIVFPQWLRKIRFTLFAVAAYAISVVDFSL--VLGPTTPPTFSVLVWQWFN 243
           G +  Q + KI  P     +  +  A+  + +S+ DF    +LG       ++   Q+ +
Sbjct: 194 GCTAFQRFRKITLPLVFPAV--STGAIICFVLSIADFGTPAILGKGIRTLSTIAYAQYTS 251

Query: 244 EPDLNLLPRAASGAVVLLLLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPHKSILTL 303
           E          +G   + +  S+V++AI     L  R   A +    S    P K  +  
Sbjct: 252 E---------MAGTPTMAVTISMVMIAISMAALLLQRHILAKRRYASSLTNRPVKQSMRP 302

Query: 304 L--FTISG--------AMIP-LTLIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHN--- 349
           L  F + G        AM+P LT+I++       P      +TG F  D +  +L +   
Sbjct: 303 LKSFIVHGFCYLVVFIAMLPSLTVIYTSFLATSGP-----VFTGGFGLDSYSRILRDSPQ 357

Query: 350 -METSVLLALGSGSLALLLGILAQEYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLL 408
            +  S + AL +  L  ++  L     +    A+     +L +LL    L+ G+ +    
Sbjct: 358 AIANSFMFALAAVVLIAIVSGLLSFIVVRRDNAVSG---SLDLLLMVPYLIPGVVMAIGY 414

Query: 409 MASQAYTWWVVWAHTFFAFPLVYL--------ALSGPWQSYNSNFSKIARSLGKSEWQIF 460
           + +  Y  + +         LV++        + +   +    +  + A +LG S  + F
Sbjct: 415 VTTFRYPPFDITGTALIIVLLVFIRRLPYGVRSTTSILRQIKPSIEEAAVNLGASPAKTF 474

Query: 461 WKIKLPLLFPALLYAWAVGISVSLAQYLPTLMLGGGRLTTI 501
             + +PL+ P L+    +    ++ +   TL+L   R  T+
Sbjct: 475 LSVTVPLMLPGLIIGSLMSFITAINELSSTLILYTARTITM 515