Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score = 58.9 bits (141), Expect = 5e-13
 Identities = 112/545 (20%), Positives = 211/545 (38%), Gaps = 71/545 (13%)

Query: 32  LPVLGHHHVSWQGFSQVWQWQGVEYALLLSVTSTLFSTYLALLMSFAILQRFWFHPRW-- 89
           +P+L    ++  G ++ WQ     + L   +    F T++ L ++ A    F     W  
Sbjct: 1   MPILAIFWLALTGSTEGWQ-----HLLANVLPRAGFRTFILLGLTAATTAFFGIVCAWLV 55

Query: 90  -------KRIENSLSIL-LALPHVAFAIGFASLFASTGWLARLLYYGFELRDNSHEVTWL 141
                  +RI ++  +L LA+P    A  F      TG +   +   F    +S    W 
Sbjct: 56  TTFEFPLRRILSAALVLPLAIPSYLAAYAFGEFLDFTGPVQSAVRAAFGY--HSIRDYWF 113

Query: 142 VHDPYAIGLTIALALKEVPFILLISLPILQQLNLTKMKMLSASLGYSEPQMWWKIVFPQW 201
                  G  I L+    P++ L +   L        +  + +LG     +++ +  P  
Sbjct: 114 PDIRSLGGAVIVLSSVLYPYVYLSARAALSMQGRFAAEA-ARTLGAKPLNVFFSVQLPMA 172

Query: 202 LRKIRFTLFAVAAYAISVVDFSLVLGPTTPPTFSVLVWQWFNEPDLNLLPRAASGAVVLL 261
              I   L  V    ++ +     LG  T  TF++    W N    NL       AV+L+
Sbjct: 173 RPAIAIGLSLVLMETLNDIGAVEYLGVQTL-TFTIYE-TWLNRG--NLANATQIAAVILI 228

Query: 262 LLASIVLVAIVALEWLFTRGYRAWQSSGRSHFPLPH------KSILTLLFTISGAMIPLT 315
           ++++++++   A E       +A   + R              S+   L   SG  IP+ 
Sbjct: 229 IVSALIVIERNAREKQRFGAPKATSMAQRHRLKALAGWRRWCASLFCFLPVASGFFIPVI 288

Query: 316 LIWSLAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETSVLLALGSGSLALLLGILAQEYR 375
           ++   A + R   LF             P +L  +  S+ ++L +  L L+   +   Y 
Sbjct: 289 VLGGYAAK-RLDALFQ------------PKLLKALGHSLEVSLSAAFLTLIAAFVFS-YA 334

Query: 376 LHTQRA---------------IPVYIIALPMLLPQLSLLFGIQVLT---------LLMAS 411
           + T+R+               +P  ++A+ +L+P  SL  G+             LL++ 
Sbjct: 335 IRTERSRLSKVAARLGSMGYGVPGTVLAIGVLIPLASLDNGVDGFIRSHFGFSSGLLLSG 394

Query: 412 QAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLFPA 471
            A+   +++AH      +    L   +   + +    +RSLG++  Q  +K+ LP + PA
Sbjct: 395 TAFA--IIYAHAVRFMTMAEGTLDAGFHKLSPHIDMASRSLGRNRAQTLFKVLLPNMRPA 452

Query: 472 LLYAWAVGISVSLAQYLPTLML---GGGRLTTITTEAVALSSGYDRRVTAIYALCQALLP 528
            L A+ + +  S+ +   T++L   G   L T+  E  + S   D  V AI  +   L+P
Sbjct: 453 ALTAFLLVLIESMKELPATILLRPFGFNTLATLVYEDASRSRVQDAAVPAIIIIMAGLIP 512

Query: 529 FVFFS 533
            +  S
Sbjct: 513 VLLVS 517