Pairwise Alignments

Query, 566 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 15/259 (5%)

Query: 299 SILTLLFTISGAMIPLTLIWS-----LAQRWRFPDLFPTQWTGQFWYDEWPNVLHNMETS 353
           ++LTL F      I + +I+S     L   W     F  QW    W ++   ++     +
Sbjct: 9   TVLTLGFAFLYIPIIILIIYSFNASKLVTVWGG---FSLQWYKSMWSNQ--GLMDAAWVT 63

Query: 354 VLLALGSGSLALLLGILAQ----EYRLHTQRAIPVYIIALPMLLPQLSLLFGIQVLTLLM 409
           + + + S ++  +LG LA      +     R +   +I  P+++P++     + +L + +
Sbjct: 64  LRVGILSATIGTILGTLAALSLTRFARFPGRVLFSGMIYAPLVMPEVITGLSLLLLFVAV 123

Query: 410 ASQAYTWWVVWAHTFFAFPLVYLALSGPWQSYNSNFSKIARSLGKSEWQIFWKIKLPLLF 469
                 W VV AHT F    V + +     +++ +  + A  LG    + F++I LPL+F
Sbjct: 124 GVDRGFWTVVIAHTTFTMCYVAIVVQSRLLTFDRSLEEAALDLGCPPVKTFFRITLPLIF 183

Query: 470 PALLYAWAVGISVSLAQYLPTLMLGGGRLTTITTEAVA-LSSGYDRRVTAIYALCQALLP 528
           PA++  W +  ++SL   +      G   TT+  +  + +  G    + AI  +   L+ 
Sbjct: 184 PAVIAGWMLAFTLSLDDLVIASFATGPGATTLPIKIYSQVRLGVTPEINAICTILIGLVT 243

Query: 529 FVFFSIALLLGRMQIHRYR 547
               + ++   R ++ R R
Sbjct: 244 IGVIAASVASKRTELQRMR 262