Pairwise Alignments

Query, 382 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 76/357 (21%), Positives = 144/357 (40%), Gaps = 54/357 (15%)

Query: 28  KARGQTVYFHAWGGSQEINSYLRWSADLLKSRYGVTLQHVKVTDIA---ETTTRLIAEKA 84
           +A+ +T+    WGG     +     A L++S+ G+ +    V D+    E   +LIAEK 
Sbjct: 35  RAQDKTLVVSNWGGDWNERTIKFVEAPLVESQ-GIKI----VRDLGMEPERKAKLIAEK- 88

Query: 85  AGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDLPNWPKVDKSLPVDSDFSEPTEGLE 144
             +  +G++D++ IN  +   +   +++       +PN+  V  +L     F        
Sbjct: 89  --RLRRGTIDVIHINEGDSVELYAQEVIDNIDFSKVPNYADVVPALKSKPFF-------- 138

Query: 145 APWGVGQLVFIHDKQQVNNPPASFAELLSYAQAFPNRISYPQPPEFHGTSFLKAALIELT 204
            PW    +  I++K +V NPP S+AEL  + + +  +I      + +    + A LI+  
Sbjct: 139 VPWLYSGVTIIYNKDKVPNPPKSYAEL--WDKKWAGKIGLTN--QLYFNYIMMAGLIKGG 194

Query: 205 HYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRKGKQFPAGSAQMMQLLDDGQLDLAI 264
           +              ++LTQP                 +  A   Q+   L +G++D+A+
Sbjct: 195 NVTNTEEGKARLIELKELTQP-----------------RIYAAHQQLGAGLVNGEVDIAV 237

Query: 265 TFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFLAIPWNANAKEGALVAINFLLSDEA 324
            +    +   Q     AP A  Y   +GA+  +   A+P  A + + +L+  N +L  +A
Sbjct: 238 NYKARGL---QWANDGAPLAIGYP-SEGAIAVMFGAALPKKAPSPDLSLIYFNAMLDPKA 293

Query: 325 QSRKGDLSIWG--------DPSILKPQFLTGSAKNTILFPAIAEPHPSWQSALEAEW 373
            +     S +          P +      T +    + FP  A  H +  +A   EW
Sbjct: 294 MAGLAGASFYAPANSKAELSPELKAKVDFTAAEAAALKFPDYA--HVAKNTAEWLEW 348