Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., putative multidrug ABC transporter permease YbhS from Xanthobacter sp. DMC5

 Score =  286 bits (731), Expect = 8e-82
 Identities = 152/368 (41%), Positives = 232/368 (63%), Gaps = 10/368 (2%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+ A++VKEF QL RDR+TF  ++MIPL+QL+LFG+AINT  R++P  V    ++  SR 
Sbjct: 13  RVGAMIVKEFIQLRRDRVTFATMIMIPLLQLILFGYAINTTPRHLPTAVFTHENNEVSRA 72

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGS 125
           ++ +++ T      +   +  +AE  I +G++   + +P+    R+ ++ +  Q L+   
Sbjct: 73  ILAALRNTAFFSFVREVKSAEDAEHMIRAGEVLFFVEIPAGF-ERALRRGDAPQLLVAAD 131

Query: 126 DTMIAG------ALLGLKNMPLTDLPTLGIQPLTPTFEITL--LYNPSRRSAVNIVPGLL 177
            T   G      AL G+ N  L     +   P +  FEI     YNP+  S +NIVPGLL
Sbjct: 132 ATDPVGSANALAALAGVVNSALVRERFVDA-PGSAAFEIVQHRRYNPAGTSQLNIVPGLL 190

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
           G ILTMTM++FT+ ++ RE ERG +E L++ P+H +E+M+GKI PY+ VG++Q  +I+G 
Sbjct: 191 GTILTMTMLIFTALSVTREIERGTMESLLSMPIHPVEIMLGKITPYVLVGILQALLIMGA 250

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
           G  +F VP+ G+   +   TLLFI  +L++G   ST+A  QLQA+QM+    LPSILLSG
Sbjct: 251 GMILFGVPLEGSAILLAVATLLFIVVNLSIGYTFSTLAQNQLQAVQMSFMFFLPSILLSG 310

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAA 357
           FMFP+ GMP  AQW+ E LP TH++R++RGI+L+G+  +DL  D   L +  L  + +A 
Sbjct: 311 FMFPFSGMPLWAQWIGEGLPLTHYLRMVRGILLKGSGFSDLTTDAGALVVLMLVAMAIAV 370

Query: 358 LRFKKSLD 365
            RF+++LD
Sbjct: 371 ARFRQTLD 378