Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., Inner membrane transport permease YhhJ from Xanthobacter sp. DMC5

 Score =  102 bits (253), Expect = 2e-26
 Identities = 89/349 (25%), Positives = 162/349 (46%), Gaps = 20/349 (5%)

Query: 4   LFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFS 63
           L  ++ ++ KE   L RDR    +VV    + ++L    +  D+    + VVD+ +S+ S
Sbjct: 18  LGNVRWLVGKELLGLWRDRALLVLVVYAFTLAIVLQANGMKHDLNRAAVAVVDEDNSALS 77

Query: 64  RLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILP----SDLVARSQQQRELGQ 119
             +++++      R     +   + +  + +      L  P    +D++A    + +L  
Sbjct: 78  NAILDALLPPSFQRPMP--IAPQDVDPMMDAARYTFVLNFPPNFQADVLAGRSPEVQL-- 133

Query: 120 WLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVN------IV 173
            LID +  M AG  LG  ++       +    L  +  +    N   R+A N        
Sbjct: 134 -LIDATALMQAG--LGANDISAIFQTEVNRFVLRHSEGVASPVNLQIRAAFNQGLESSWF 190

Query: 174 PGLLGVI--LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
            G +G+I  +TM  +L   AA++RERE G LE L+  PV   E+M+ K+V    V L+  
Sbjct: 191 TGTMGLITNITMLSVLLAGAALIREREHGTLEHLLVLPVRPSEIMLAKVVANGAVILVAT 250

Query: 232 AI-ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILL 290
            + ++ +  ++  V I G++   L G  L++  + +LG+ + T+A +  Q   +   ++L
Sbjct: 251 LVSLVAVLKWVLGVSIAGSIPLFLAGAALYLFFTASLGIFLGTLAGSMPQFGLLFFLVVL 310

Query: 291 PSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLW 339
           P  +LSG   P E MP   Q   +  P+T F+   + I+ RGA L  +W
Sbjct: 311 PMNMLSGGFTPLESMPQWLQVTMQASPSTQFVAFAQAILYRGAGLETVW 359