Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 909 a.a., Ribosome-associated ATPase from Xanthobacter sp. DMC5

 Score =  129 bits (324), Expect = 3e-34
 Identities = 94/366 (25%), Positives = 168/366 (45%), Gaps = 10/366 (2%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+ A   +E  +L RD +     ++     +++FG+ I  DV  +   V+D+  +  SR 
Sbjct: 542 RLAAYAWRETLELKRDPVRLAFALLGTAFLMIIFGYGITLDVDRLRFAVLDRDQTPESRA 601

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVA--RSQQQRELGQWLID 123
            ++    +   R++    + ++ ++ + S  I  A+ LP    A  RS +Q E+    ID
Sbjct: 602 YIDGFAHSTYFRIQPPLTSPDDLDRRLKSNAIAFAIELPPSFGADLRSGRQTEV-LVTID 660

Query: 124 GSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTF------EITLLYNPSRRSAVNIVPGLL 177
           G+    A  + G      T       Q     +      E+   YN S RS   +VP  +
Sbjct: 661 GAMPFRAETIKGYVEAVHTLFLADAAQAAGRAYSAFAGLEMRYRYNQSFRSLDAMVPANI 720

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            ++L     + T+  +V E+E G++  L  TPV  +E ++GK  PY+ V L    +++ +
Sbjct: 721 ALMLIFIPAILTALGVVTEKELGSITNLYVTPVTKLEFLLGKQAPYVGVALFNFVVMVLM 780

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMT-VFILLPSILLS 296
             F+F VP+ G+   +  G   ++ A+  +GLV ST+ NTQ+ A+  T +  ++P+   S
Sbjct: 781 ALFLFGVPLKGSFLGLALGAFAYVLATTAIGLVSSTLTNTQVAALFGTAIGTMMPATQFS 840

Query: 297 GFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLA 356
           G + P   +      L    P T+FMR+  G   +G    +L    +  A F    L +A
Sbjct: 841 GMLQPVTSLEGGGWVLGTFFPTTYFMRVSVGAFTKGLSFTELLPFIMATAAFWPALLAIA 900

Query: 357 ALRFKK 362
            L  +K
Sbjct: 901 FLILRK 906