Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 905 a.a., multidrug ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  157 bits (397), Expect = 1e-42
 Identities = 108/373 (28%), Positives = 181/373 (48%), Gaps = 20/373 (5%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           SL R+ AV  +E ++L RD++     ++  +  +++FG+ I+ DV N+   + DQ  +  
Sbjct: 533 SLARLLAVASREGKELLRDKVRMAFALLGAMFMMVIFGYGISLDVENLAFAIYDQDQTPQ 592

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRELG 118
           SR  +E  + ++    +      NE  + +   +I+ AL +P     DL A   +Q  + 
Sbjct: 593 SRAYLEGFRSSRYFAEQPPIRDSNELHRRLQRSEIKLALEIPPGFGRDLYAG--RQPSVA 650

Query: 119 QWLIDG------SDTMIAGALLGLKNMPLTDLPTLGIQ-PLTPTFEITLLYNPSRRSAVN 171
            W   G      +      A+       L +L +L    P     E    YN    S   
Sbjct: 651 AWFDGGMPFRAETSRNYVEAVHQENLQQLAELSSLPRNHPAAAKLETRFRYNQDVVSVNA 710

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           I PG++ +IL     + T+  IVRE+E G++     TP+  +E ++GK  PY+ V L+ +
Sbjct: 711 IGPGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQTPYLAVSLVNL 770

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFIL-L 290
           A+++ +  ++F VP  G+   + FG LL++ A+ ++GL+IS    TQ+ A+  T+ I  L
Sbjct: 771 AVLVAMNRWLFGVPFKGSGLTLAFGGLLYVLATTSMGLLISAFTRTQIAAILGTMIITSL 830

Query: 291 PSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTL 350
           P+I  SG + P   +  AA  +  L PA HF+ +  G   +  DL  LW     LALF  
Sbjct: 831 PTIQFSGLIVPRSSLEGAAALMGMLFPAGHFLDIAVGTFTKALDLRQLWPQC--LALFGF 888

Query: 351 F----GLMLAALR 359
           F    GL L  L+
Sbjct: 889 FVGFTGLSLIMLK 901