Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 81/350 (23%), Positives = 143/350 (40%), Gaps = 31/350 (8%)

Query: 28  VVMIPLIQLLLFGFAI-----NTDVRNIPIGVVDQSDSSFSRLLVESVKVTQVIRVKQHY 82
           V++I LI  +++GF          V  +P+ VVDQ  S+ SR +         + V+   
Sbjct: 26  VLLIMLIAPIIYGFFYPWPYGTQAVTRVPVAVVDQDHSALSRQIARFAMANPRLDVRMVT 85

Query: 83  LTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDT---MIAGALLGLKNM 139
             V+EA++A+  G+I    +LP+DL  RS  +       I+G+     +    L G    
Sbjct: 86  SDVHEAQQALWRGEIEGYALLPADL-KRSVLRGTSAVVTIEGNGAYALLNKAVLYGFSEA 144

Query: 140 PLTDLPTLGIQPLTP---------------TFEITLLYNPSRRSAVNIVPGLLGVILTMT 184
             T    + I+ L                   ++  L+NP+      +VP +  +IL  T
Sbjct: 145 VGTVSAGVEIRKLQAGGQSAVQAARSRSPLNTQLVALFNPTEGYGSYVVPAVALLILQQT 204

Query: 185 MILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFIFAV 244
           +++  +       E G L         ++   +G++      G +      G   F+   
Sbjct: 205 LLMGAAMLAGTWAEAGRLRA-------TMGAWLGRLGALSGFGFLSGLFYFGWVFFLQDY 257

Query: 245 PINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPYEG 304
           P  G     +     ++ A  TLGL++      + +A+Q+ +F  LP   LSGF +P E 
Sbjct: 258 PRGGNPLGAMVLLAFYVPAICTLGLLLGCWFRDRERALQVLLFTALPMAFLSGFSWPVEA 317

Query: 305 MPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLM 354
           +P   Q L  + P+T  ++    +   GA L D+      +   TL GL+
Sbjct: 318 LPGPLQALRWVFPSTAGIQGSLRLNQMGAPLHDVLPYIGVMLALTLAGLL 367