Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

 Score =  153 bits (387), Expect = 2e-41
 Identities = 106/371 (28%), Positives = 187/371 (50%), Gaps = 16/371 (4%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           SL R+ AV V+E ++L RD++     ++  +  +++FG+ I+ DV N+   V DQ  S  
Sbjct: 534 SLRRLLAVAVREGKELLRDKVRLAFALLGAVFMMVIFGYGISLDVENLAFAVHDQDQSPQ 593

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRELG 118
           SR  +E+ + ++    +      +E  + +   +I+ AL +P     DL A   +Q  + 
Sbjct: 594 SRAYLEAFRGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAG--RQPVVA 651

Query: 119 QWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPT-------FEITLLYNPSRRSAVN 171
            WL  G       +   ++ +   +L  L      P         E    YN    S   
Sbjct: 652 AWLDGGMPFRAETSRNYVEAVHQANLEQLAKASPQPQPRQDPVRLETRFRYNQDVVSVNA 711

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           I PG++ +IL     + T+  IVRE+E G++     TP+  +E ++GK +PY+ V L+ +
Sbjct: 712 IGPGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQMPYLAVSLVNL 771

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFIL-L 290
           A+++ +  ++FAVP+ G++  +  G + ++ A+ +LGL+IS    TQ+ A+  T+ I  L
Sbjct: 772 ALLVAMNRWLFAVPLKGSVLALACGGVAYLLATTSLGLLISAFTRTQIAAILGTMIITSL 831

Query: 291 PSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTL-WLALFT 349
           P+I  SG + P   +  AA  + +L PA +F+ +  G   +   L +LW   L  L+ F 
Sbjct: 832 PTIQFSGLIVPRSSLDGAAAVMGQLFPAGYFLDIAVGTFTKALGLRELWPQCLILLSFFA 891

Query: 350 LF-GLMLAALR 359
            F GL LA L+
Sbjct: 892 AFTGLSLAMLK 902