Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., ABC-type multidrug transport system, permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 91/343 (26%), Positives = 149/343 (43%), Gaps = 37/343 (10%)

Query: 10  VLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRLLVE 68
           V+ +E+++L  D    GM+  IPL   LL  +     + R++PI V+D+  SS SR L+ 
Sbjct: 13  VVRREWQRLRHDAWDLGMLTWIPLGVCLLIWWMFAAGIARDLPIVVIDRDQSSLSRSLLR 72

Query: 69  SVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELG-------QWL 121
            V  +  +RV       NEAE      + RA  +L    V  +  Q ++G        W 
Sbjct: 73  MVDESPGVRVAA--AVGNEAEATAWLRERRAYGLL----VVPASFQHDIGAGRSATVSWF 126

Query: 122 IDGSDTMIAGALLGLKNMPLTDLPTL--GIQ------------PLTPTFE-----ITLLY 162
            +G  ++ AG   GL     T + TL  GI+                 FE     +  LY
Sbjct: 127 YNGQFSVHAG---GLTRDVRTAVSTLSAGIEMTARGKRGASAAQAAEQFEPIRLRLGTLY 183

Query: 163 NPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNL-ELLITTPVHSIELMIGKIV 221
           N +      +V  L+  +L + + L    A+ RE   G++ + L +        + GK+V
Sbjct: 184 NENANYESFLVLALIPSMLQIFVALAAITAVGRELRAGSVPQWLASAGGRWHTAVAGKLV 243

Query: 222 PYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQA 281
                  +Q  + +    F+    I G+   I+ G  L I+A L LGL++  +  T   A
Sbjct: 244 IPAAAFAVQAVLFVVFFGFVRGWAIEGSGLMIVAGLWLLIAAYLGLGLLMIAVTLTLRNA 303

Query: 282 MQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRL 324
           +    F+  P+   SG  +P   MP  A+  +E LP TH+++L
Sbjct: 304 LSAAAFVTAPAFAFSGQGYPLSAMPALARAWAEALPLTHYLQL 346