Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., ABC transport system, permease component YbhS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  164 bits (416), Expect = 3e-45
 Identities = 109/373 (29%), Positives = 195/373 (52%), Gaps = 18/373 (4%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSS---- 61
           R++A+ VKE RQ+ RD  ++ + V+IPL+ L +FG+ IN D   + +G++ +  S     
Sbjct: 9   RVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQQSQEALD 68

Query: 62  FSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELG--Q 119
           F+  +  S  +   I   +H L      + + +G IR  +++P D   +  +  +    Q
Sbjct: 69  FTHAMTGSPYIDATISDNRHELI-----EKMQAGRIRGLVVIPVDFAQQMARDGDSAPIQ 123

Query: 120 WLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITL------LYNPSRRSAVNIV 173
            + DGS+   A  + G              +    TFE  +       +NP+  S   I+
Sbjct: 124 VITDGSEPNTANFVQGYVEGIWQIWQQQRAEDRGDTFEPLIDVQTRYWFNPAAISQHFII 183

Query: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI 233
           PG + +I+T+   + TS  + RE ERG +E L++T V  +EL++ K++PY F+G++ + +
Sbjct: 184 PGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEVTRVELLLCKLIPYYFLGMLAMLL 243

Query: 234 ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTV-FILLPS 292
            + +  FI  VP  G+L  +   T LF+ ++L +GL+ISTI   Q  A Q+ +    LPS
Sbjct: 244 CMLVSVFILGVPYRGSLVILFIITSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLPS 303

Query: 293 ILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFG 352
           I+LSGF+F  + MP   + ++ ++PA +F+  ++ + L G     L  + L+L    +  
Sbjct: 304 IMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLGVNVLFLIASAVMF 363

Query: 353 LMLAALRFKKSLD 365
           + L  L+ K+ LD
Sbjct: 364 IGLTWLKTKRRLD 376