Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., ABC transport system, permease component YbhR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  139 bits (351), Expect = 9e-38
 Identities = 97/347 (27%), Positives = 177/347 (51%), Gaps = 12/347 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+  ++ KE + L R+  T  ++++  LIQ++LF FA   +V N  I + ++ +   S  
Sbjct: 4   RLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKHS-- 61

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALIL---PSDLVARSQQ-QRELGQWL 121
            VE  +     +   H L +N  ++   + D + AL+L   P+D        Q    Q +
Sbjct: 62  -VELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPMQLI 120

Query: 122 IDGSDT----MIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLL 177
           +DG ++    + A  L  +       L     +P      +   YNP+      +VP L+
Sbjct: 121 LDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI 180

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            +I T+ +++ TS ++ RERE+G L+ L+ +P+ + ++ +GK VP + V   Q  I+L +
Sbjct: 181 AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAI 240

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
           G + + +P  G+L+   F  +++  + +  GL+IS++  TQ QA       ++P+ILLSG
Sbjct: 241 GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSG 300

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLW 344
           ++ P E MP   Q L+ + P  HF  + + I L+ A L  +W  +LW
Sbjct: 301 YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLGIVW-GSLW 346