Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 913 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  147 bits (372), Expect = 9e-40
 Identities = 95/361 (26%), Positives = 188/361 (52%), Gaps = 16/361 (4%)

Query: 13  KEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVKV 72
           +E  +L RD +   + ++  +I +L+ G+ I+ DV N+   V+D+  +  S+    ++  
Sbjct: 551 REALELRRDPVRSTLALLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWSLNLAG 610

Query: 73  TQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDL---VARSQQQRELGQWLIDGSDTMI 129
           ++    +    + +E ++ + SG++  A+ +P +    +AR     ++G W +DG+    
Sbjct: 611 SRYFIEQPPLASYDELDRRMRSGELAVAIEIPPNFGRDIARGTPA-QIGVW-VDGAMPSR 668

Query: 130 AGALLG-LKNMPLTDLPTLGIQPLTPTFEITLL-------YNPSRRSAVNIVPGLLGVIL 181
           A  + G ++ M  + L     +   P  ++ LL       YNP  +S   IVP ++ ++L
Sbjct: 669 AETVKGYVQAMHQSWLQEAASRQPNPVKQVGLLNIETRYRYNPDVKSLPAIVPAVIPLLL 728

Query: 182 TMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFI 241
            M   + ++ ++VRE+E G++  L  TP    E ++GK +PYI +G++   ++  L  F+
Sbjct: 729 MMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFV 788

Query: 242 FAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMT-VFILLPSILLSGFMF 300
           F VP+ G+   +    LL++  +  LGL+IST   +Q+ A+  T +  L+P+   SG + 
Sbjct: 789 FGVPLKGSFLTLTLAALLYVIIATGLGLLISTFMKSQIAAIFGTSIITLIPATQFSGMID 848

Query: 301 PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWR--DTLWLALFTLFGLMLAAL 358
           P   +    +W+ E+ P +HF+ + RG   +  DL+DLW     L +A+  + GL +  L
Sbjct: 849 PVASLEGPGRWIGEIYPTSHFLTIARGTFSKALDLSDLWPLFMPLLIAVPVVMGLSILLL 908

Query: 359 R 359
           +
Sbjct: 909 K 909