Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., predicted transporter subunit: membrane component of ABC superfamily (RefSeq) from Escherichia coli BW25113

 Score =  112 bits (280), Expect = 2e-29
 Identities = 99/384 (25%), Positives = 177/384 (46%), Gaps = 34/384 (8%)

Query: 1   MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS 60
           M  L  I  + +KE R L  D+    ++V    + +          +   PI + D   S
Sbjct: 1   MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTPGSLNLAPIAIADMDQS 60

Query: 61  SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLVARSQQQRE 116
             S  +V S      +  +   +T +E +  + +G    A+ +P     D++A  Q   +
Sbjct: 61  QLSNRIVNSFYRPWFLPPEM--ITADEMDAGLDAGRYTFAINIPPNFQRDVLAGRQPDIQ 118

Query: 117 LGQWLIDGSDTMIAGALLG---LKNMPLTDLPTL------GIQPLTPTFEITLLYNPSRR 167
           +    +D   T ++ A  G   ++N+   ++ +         +PL  + E  + +NP+  
Sbjct: 119 VN---VDA--TRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLV-SLETRMRFNPNLD 172

Query: 168 SAVNIVPGLLGVI--LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKI----- 220
            A     G++ +I  +TM  I+ T +A++RERE G +E L+  P+   E+M+ KI     
Sbjct: 173 PAW--FGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGL 230

Query: 221 VPYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQ 280
           V  +  GL  V ++ G    +  VPI G++   + G  L + A+ ++G+ + TIA +  Q
Sbjct: 231 VVLVVSGLSLVLMVKG----VLGVPIEGSIPLFMLGVALSLFATTSIGIFMGTIARSMPQ 286

Query: 281 AMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWR 340
              + + +LLP  +LSG   P E MP   Q +   +P THF+ L + I+ RGA    +W 
Sbjct: 287 LGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAILYRGAGFEIVWP 346

Query: 341 DTLWLALFTLFGLMLAALRFKKSL 364
             L L         +A LRF+K++
Sbjct: 347 QFLTLMAIGGAFFTIALLRFRKTI 370