Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., predicted transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  163 bits (412), Expect = 8e-45
 Identities = 107/373 (28%), Positives = 195/373 (52%), Gaps = 18/373 (4%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSS---- 61
           R++A+ VKE RQ+ RD  ++ + V+IPL+ L +FG+ IN D   + +G++ +  S     
Sbjct: 10  RVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQRSEAALD 69

Query: 62  FSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELG--Q 119
           F+  +  S  +   I   +  L        + +G IR  +++P D   + ++       Q
Sbjct: 70  FTHTMTGSPYIDATISDNRQELIAK-----MQAGKIRGLVVIPVDFAEQMERANATAPIQ 124

Query: 120 WLIDGSD----TMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLY--NPSRRSAVNIV 173
            + DGS+      + G + G+  +          Q   P  ++   Y  NP+  S   I+
Sbjct: 125 VITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQHFII 184

Query: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAI 233
           PG + +I+T+   + TS  + RE ERG +E L++T +   EL++ K++PY F+G++ + +
Sbjct: 185 PGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGMLAMLL 244

Query: 234 ILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTV-FILLPS 292
            + +  FI  VP  G+L  + F + LF+ ++L +GL+ISTI   Q  A Q+ +    LPS
Sbjct: 245 CMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLPS 304

Query: 293 ILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFG 352
           I+LSGF+F  + MP   + ++ ++PA +F+  ++ + L G     L  + L+L    +  
Sbjct: 305 IMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIASAVMF 364

Query: 353 LMLAALRFKKSLD 365
           + L  L+ K+ LD
Sbjct: 365 IGLTWLKTKRRLD 377