Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., ABC-type multidrug transport system, permease component from Enterobacter asburiae PDN3

 Score =  142 bits (357), Expect = 2e-38
 Identities = 98/347 (28%), Positives = 176/347 (50%), Gaps = 12/347 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+  ++ KE + L R+  T  ++V+  LIQ+LLF FA   +V N  I + ++ +   S  
Sbjct: 4   RLWTLIRKELQSLLREPQTRAILVLPVLIQVLLFPFAATLEVTNATIAIYNEDNGKHS-- 61

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALIL---PSDLVARSQQ-QRELGQWL 121
            VE  +     +   H L +   ++   + D + AL+L   P+D        Q    Q +
Sbjct: 62  -VELTQRFARAKAFTHILLLKSPQEIQTTIDTQKALLLVRFPADFSRNLDTFQTAPMQLI 120

Query: 122 IDGSDTMIAGALLGLKNMPLTDLPTLGIQ----PLTPTFEITLLYNPSRRSAVNIVPGLL 177
           +DG ++  A          + D     ++    P      +   YNP+      +VP L+
Sbjct: 121 LDGRNSNSAQIAANYLQQVVKDYQQELMEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI 180

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            +I T+ +++ TS ++ RERE+G L+ L+ +P+ + ++ +GK VP + V   Q  I+LG+
Sbjct: 181 AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFVGKAVPALIVATFQATIVLGV 240

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
           G + + +P  G+L+   F  +++  + +  GL+IS + +TQ QA       ++P+ILLSG
Sbjct: 241 GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISALCSTQQQAFIGVFVFMMPAILLSG 300

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLW 344
           ++ P E MP   Q L+ + P  HF  + + I L+ A L  +W  +LW
Sbjct: 301 YVSPVENMPVWLQDLTWVNPIRHFTDITKQIYLKDASLDIVW-GSLW 346