Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., putative multidrug ABC transporter permease YbhR from Escherichia coli ECRC62

 Score =  141 bits (355), Expect = 3e-38
 Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 12/347 (3%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+  ++ KE + L R+  T  ++++  LIQ++LF FA   +V N  I + D+ +   S  
Sbjct: 4   RLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEHSVE 63

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALIL---PSDLVARSQQ-QRELGQWL 121
           L +            H L +   ++   + D + AL+L   P+D   +    Q    Q +
Sbjct: 64  LTQRFARASAFT---HVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLI 120

Query: 122 IDGSDT----MIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLL 177
           +DG ++    + A  L  +      +L     +P      +   YNP+      +VP L+
Sbjct: 121 LDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI 180

Query: 178 GVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGL 237
            +I T+ +++ TS ++ RERE+G L+ L+ +P+ + ++ IGK VP + V   Q  I+L +
Sbjct: 181 AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI 240

Query: 238 GHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSG 297
           G + + +P  G+L+   F  +++  + +  GL+IS++ +TQ QA       ++P+ILLSG
Sbjct: 241 GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG 300

Query: 298 FMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLW 344
           ++ P E MP   Q L+ + P  HF  + + I L+ A L  +W ++LW
Sbjct: 301 YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVW-NSLW 346