Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECRC62

 Score =  156 bits (394), Expect = 2e-42
 Identities = 105/371 (28%), Positives = 194/371 (52%), Gaps = 16/371 (4%)

Query: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62
           SL R+ +   +E  +L RD +   + +M  +I +L+ G+ I+ DV N+   V+D+  +  
Sbjct: 539 SLRRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVS 598

Query: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDL---VARSQQQRELGQ 119
           S+    ++  ++    +    + +E ++ + +GDI  A+ +P +    +AR     ELG 
Sbjct: 599 SQAWTLNLSGSRYFIEQPPLTSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPV-ELGV 657

Query: 120 WLIDGSDTMIAGALLG-LKNMPLTDLPTLGIQPLTPTFEITLL-------YNPSRRSAVN 171
           W IDG+    A  + G ++ M  + L  +  +  TP  +  L+       YNP  +S   
Sbjct: 658 W-IDGAMPSRAETVKGYVQAMHQSWLQDVASRQSTPASQSGLMNIETRYRYNPDVKSLPA 716

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           IVP ++ ++L M   + ++ ++VRE+E G++  L  TP    E ++GK +PYI +G++  
Sbjct: 717 IVPAVIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNF 776

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFI-LL 290
            ++ GL  F+F VP  G+   +    LL+I  +  +GL+IST   +Q+ A+  T  I L+
Sbjct: 777 FLLCGLSVFVFGVPHKGSFLTLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLI 836

Query: 291 PSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWR--DTLWLALF 348
           P+   SG + P   +    +W+ E+ P +HF+ + RG   +  DL DLW+    L +A+ 
Sbjct: 837 PATQFSGMIDPVASLEGPGRWIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIP 896

Query: 349 TLFGLMLAALR 359
            + GL +  L+
Sbjct: 897 LVMGLSILLLK 907