Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 93/387 (24%), Positives = 163/387 (42%), Gaps = 64/387 (16%)

Query: 14  EFRQLSRDRITFGMVVMIPLIQLLLFGFAINTD-VRNIPIGVVDQSDSSFSRLLVESVKV 72
           E R++   R  F + ++   I  + +     T+ +RN+PI VVD+  +S SR ++  +  
Sbjct: 11  ELRRIFTVRPVFSVFILAAAIYAVFYPQPYLTEALRNVPIVVVDRDGTSSSREMIRRLDA 70

Query: 73  TQVIRVKQHYLTVNEAEKAIASGDIRAALILPS----DLV-------------------- 108
           T  + V      +  A++A+    +   L++P     DL+                    
Sbjct: 71  TSDVSVALVLPDLPSAQRAVYERAVSGILLIPGNFERDLLHGRPSPVALYADASYFLIYQ 130

Query: 109 ----ARSQQQRELG------QWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEI 158
               A S   R LG      + +  G D  +AGA++    MPLT +P             
Sbjct: 131 RIAGAISAVARTLGAEVESARLVAAGVDPALAGAVVD--PMPLTAVP------------- 175

Query: 159 TLLYNPSRRSAVNIVPGLLGVILTMTMILFTSA-AIVRERERGNLELLITTPVHSIELMI 217
             L+NP    A  ++P    +IL   +++ T     + +  R     L T        + 
Sbjct: 176 --LFNPQGGYATYLLPAAFILILQQLLLIGTGLLGTIPDPSRPRAGPLAT--------VT 225

Query: 218 GKIVPYIFVGLIQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANT 277
           GK + Y+    + +   L    +++ +P  G+ + +L   L F  A   LGL+ S +  T
Sbjct: 226 GKYMAYLVPAALILPFYLIALPYLYGIPRLGSPATVLLFALPFALAVNGLGLIASAVFRT 285

Query: 278 QLQAMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLAD 337
            L     T  + LP   L+GF +P E MP A + ++ LLP+T  +  +  +   GA L++
Sbjct: 286 PLAVQLATAAVGLPFFFLAGFSWPQESMPDAVRLVARLLPSTSAIDGLVRVAQLGAPLSE 345

Query: 338 LWRD--TLWLALFTLFGLMLAALRFKK 362
           +     TLW AL  L+G +  AL  ++
Sbjct: 346 VAEPFLTLW-ALAGLYGAIAVALAARR 371