Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., putative multidrug ABC transporter permease YbhS from Azospirillum sp. SherDot2

 Score =  275 bits (703), Expect = 1e-78
 Identities = 151/374 (40%), Positives = 233/374 (62%), Gaps = 18/374 (4%)

Query: 6   RIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRL 65
           R+ AV+VKEF Q+ RDR+TF M+V +P++QL+LFGFAIN+D + +P  ++    S F+R 
Sbjct: 8   RLMAVMVKEFIQMRRDRLTFAMMVGVPILQLILFGFAINSDPKALPTALLVADSSPFART 67

Query: 66  LVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGS 125
           LV +++ ++   + +   +  E ++ +A G+++ A+ +P    AR  Q+      L++  
Sbjct: 68  LVAAMENSRYFAITRSAASEAEIDRLLAEGEVQFAVTIPPGF-ARDLQRGTRPVLLVEAD 126

Query: 126 DTMIAGALLGLKNM--------------PLTDLPTLGIQPLTPTFEITLLYNPSRRSAVN 171
            T  A     L  +              PL  L T G+ P+     +   YNP   +  N
Sbjct: 127 ATDPAATSNALSALTAIARQALNPDLTGPLASLRT-GLDPVD--LRVHRRYNPEGITQYN 183

Query: 172 IVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQV 231
           +VPGL+GV+LTMTM++ T+ A+ RERERG +E L+  PV   E+M+GKIVP++ VG +QV
Sbjct: 184 VVPGLMGVVLTMTMVMMTALAVTRERERGTMENLLAMPVRPFEVMLGKIVPFVVVGYVQV 243

Query: 232 AIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLP 291
            +I+     +F VPI G+L  +    +LFI+A+L +G   ST+A  QLQAMQM+ F  LP
Sbjct: 244 LLIVVAARLLFDVPIVGSLGLLSAVLILFIAANLAVGFTFSTLARNQLQAMQMSFFFFLP 303

Query: 292 SILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLF 351
           S+LLSGFMFP+ GMP  AQ + E+LP THF+R++RGI+L+G  LA++  + L LALF   
Sbjct: 304 SMLLSGFMFPFRGMPGWAQAVGEILPLTHFLRIVRGILLKGNGLAEIAAEVLALALFLTV 363

Query: 352 GLMLAALRFKKSLD 365
             ++A  R++++LD
Sbjct: 364 VTVVALKRYRQTLD 377