Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Inner membrane transport permease YhhJ from Alteromonas macleodii MIT1002

 Score =  115 bits (289), Expect = 1e-30
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 24/368 (6%)

Query: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71
           VKE   L RD     +VV +  + +     A+   + N PI  VD  +S  S+ ++++  
Sbjct: 11  VKELWSLWRDPAMLILVVYVFTVNIYTAATAVPESLHNAPIAFVDHDNSQMSKRIIDAFY 70

Query: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILP----SDLVARSQQQRELGQWLIDGSDT 127
               +      +  NEA+  + +G     + +P     D++A  Q   ++    +D   T
Sbjct: 71  PPYFLT--PDLIESNEADTYLDTGKYAFVVTIPPEFEKDIMAGLQPDVQVN---VDA--T 123

Query: 128 MIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGV-------- 179
            I+ A  G  N  +T++ T  +      ++  + Y       V   P L G         
Sbjct: 124 RISQAFTG--NGYITEIITSEVNTYLQGYKSDIDYPVELIMRVRFNPALEGFWFGSVMEL 181

Query: 180 --ILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPY-IFVGLIQVAIILG 236
              +TM  I+ + AA++RE+ERG +E L+  PV   E+M+ KI+   + V +  +  +  
Sbjct: 182 INAVTMIAIILSGAALIREKERGTIEHLLAMPVSDSEIMLSKILASGVVVWVTTLFSVYF 241

Query: 237 LGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLS 296
           +  ++ +VPING +   +    L + A  ++G+ ++TIA +  Q   + + +LLP  LLS
Sbjct: 242 IIQWVLSVPINGEIWLFMVAVALQLFAVSSMGIFMATIARSMPQFGLLLILVLLPLQLLS 301

Query: 297 GFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLA 356
           G + P E MP   Q    L+P THF+   +G++ RGA ++ ++   L L        ++A
Sbjct: 302 GGVTPRESMPGFIQSAMLLMPNTHFVEASQGVLYRGAGISVVYPQLLALLAIGCAFYLIA 361

Query: 357 ALRFKKSL 364
             RFK ++
Sbjct: 362 LKRFKSTV 369