Pairwise Alignments

Query, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  122 bits (306), Expect = 2e-32
 Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 16/364 (4%)

Query: 12  VKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVK 71
           +KE R L+RD +   ++V    +Q+     A+   + N  I +VD+  S  S  +  +  
Sbjct: 13  IKELRGLARDGMLLLLIVYAFTLQIYTGSSALPETLNNAAIAIVDEDQSPLSGRISTAFY 72

Query: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQ-QRELGQWLIDGSDTMIA 130
                  KQ  +++ E +K + +G    AL +P D   R    Q+   Q  ID   T ++
Sbjct: 73  PPYFAPPKQ--ISIAEMDKRMDAGLDTFALNIPPDFQRRLMAGQQPAIQLNIDA--TRMS 128

Query: 131 GALLG---LKNMPLTDLPTL-----GIQPLTPTFEITLLYNPSR-RSAVNIVPGLLGVIL 181
            A  G   ++N+  +++        G   +     +   +NP   +S    +  ++  I 
Sbjct: 129 QAFSGGGYVQNIVTSEVQEYVNRYRGATTVPVDLTLRSRFNPELDKSWFGSINNIITAI- 187

Query: 182 TMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLG-HF 240
           TM  I+ T AA++RERE G +E L+  PV  +E+M+ K+     V L+  A  L +    
Sbjct: 188 TMLSIVLTGAALIREREHGTVEHLLVMPVTPLEIMLSKVWSMGLVVLVASAFSLFVVVKG 247

Query: 241 IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMF 300
           + A+PI G+LS  L GT L + A  ++G+ ++T+A +  Q   + +  LLP  +LSG M 
Sbjct: 248 LLAIPIEGSLSLFLLGTALQLFAMTSMGIFLATVAGSMPQFGMLLILFLLPLQVLSGAMT 307

Query: 301 PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRF 360
           P E MP   Q++  L P THF+ L + ++ RG  L  +W   L L        + A  RF
Sbjct: 308 PRESMPDIIQYIMLLAPNTHFVILAQSVLFRGGGLDVVWPQLLALLAIGSALFIFALRRF 367

Query: 361 KKSL 364
           ++ L
Sbjct: 368 RRFL 371