Pairwise Alignments

Query, 308 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., ABC transporter multidrug efflux pump, fused ATP-binding domains from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  200 bits (508), Expect = 8e-56
 Identities = 96/220 (43%), Positives = 139/220 (63%)

Query: 6   IHAENVVKQFGHFTAIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPTAGQIKVL 65
           I A+ + K+FG F A +++N  V+RG I+G LGPNG GKSTT +++ GLL PT+G+  VL
Sbjct: 330 IEAQELTKKFGDFAATDHVNFVVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVL 389

Query: 66  GLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQAQLKTYG 125
            + +   S   R  +GYM QKFSLY +LTV++NL+F   ++G+      ++ Q   + +G
Sbjct: 390 DMDLKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIQRMSEAFG 449

Query: 126 LDERRKQRVSGMSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWEQLFDLSAQ 185
           L          +  G KQRLALA + MH P++LFLDE TS VDP  RREFW  +  +  +
Sbjct: 450 LKSIASHPTDALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEK 509

Query: 186 GTTILVTTHYMDEAERCHRLAIMEAGEIRADDEPEKLMQQ 225
           G T++VTTH+MDEAE C R+ ++  G++ A   P+ L  Q
Sbjct: 510 GVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQ 549



 Score =  157 bits (398), Expect = 4e-43
 Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 9/309 (2%)

Query: 1   MSDYAIHAENVVKQFGHFT--AIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPT 58
           MS+  I    + K+F      A+  ++  +  G + G +GP+G GK+T +R+L GLL+  
Sbjct: 1   MSEAVITLHGLTKRFAGMDKPAVAPLDCTIHSGYVTGLVGPDGAGKTTLMRMLAGLLKAD 60

Query: 59  AGQIKVLGLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQ 118
            G   VLG    +    L   +GYM QKF LY+DLTV ENL     +  +    ++++T 
Sbjct: 61  GGSASVLGFDPIQNDSELHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVT-GEIREKTF 119

Query: 119 AQLKTYGLDERRKQRVSG-MSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWE 177
           A+L  +        R++G +SGG KQ+L LA   +  P++L LDE    VDP +RRE W+
Sbjct: 120 ARLLEFTALGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQ 179

Query: 178 QLFDLSAQGTTILVTTHYMDEAERCHRLAIMEAGEIRADDEPEKLMQQMGVNVVEIKAPA 237
            + +L+  G  IL +T Y+DEAE+C  + +M  GE+    EP+ L Q M      + +P 
Sbjct: 180 MVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMSSPQ 239

Query: 238 --LRSLKEKLLNFSQVRSAAQLGIRLRVLVHRDVIDPILWLRHTFPQLAAAELTLARPSL 295
              R L ++ L   QV      G  +R+++ ++     +      P++   E     P  
Sbjct: 240 ENNRKLLQRALRLPQVSDGMIQGRSVRLILKKEATAADIRQAEGMPEITLNE---TAPRF 296

Query: 296 EDVFVTVTG 304
           ED F+ + G
Sbjct: 297 EDAFIDLLG 305