Pairwise Alignments

Query, 308 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., putative ATP-binding component of a transport system (VIMSS) from Escherichia coli BW25113

 Score =  202 bits (515), Expect = 1e-56
 Identities = 97/220 (44%), Positives = 140/220 (63%)

Query: 6   IHAENVVKQFGHFTAIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPTAGQIKVL 65
           I A+ + K+FG F A +++N  V+RG I+G LGPNG GKSTT +++ GLL PT+GQ  VL
Sbjct: 330 IEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVL 389

Query: 66  GLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQAQLKTYG 125
           G+ + + S   R  +GYM QKFSLY +LTV++NL+F   ++G+      ++     + +G
Sbjct: 390 GMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFG 449

Query: 126 LDERRKQRVSGMSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWEQLFDLSAQ 185
           L          +  G KQRLALA + MH P++LFLDE TS VDP  RREFW  +  +  +
Sbjct: 450 LKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEK 509

Query: 186 GTTILVTTHYMDEAERCHRLAIMEAGEIRADDEPEKLMQQ 225
           G T++VTTH+MDEAE C R+ ++  G++ A   P+ L  Q
Sbjct: 510 GVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQ 549



 Score =  162 bits (409), Expect = 2e-44
 Identities = 98/308 (31%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 1   MSDYAIHAENVVKQFGHFT--AIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPT 58
           M+D  I    + K+F      A+  ++  +  G + G +GP+G GK+T +R+L GLL+P 
Sbjct: 1   MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPD 60

Query: 59  AGQIKVLGLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQ 118
           +G   V+G    K    L   +GYM QKF LY+DLTV ENL     +  +     +Q   
Sbjct: 61  SGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFA 120

Query: 119 AQLKTYGLDERRKQRVSGMSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWEQ 178
             L+   L     +    +SGG KQ+L LA   +  P++L LDE    VDP +RRE W+ 
Sbjct: 121 RLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQM 180

Query: 179 LFDLSAQGTTILVTTHYMDEAERCHRLAIMEAGEIRADDEPEKLMQQMGVNVVEIKAP-- 236
           + +L+ +G  IL +T Y+DEAE+C  + +M  GE+    EP+ L Q M      + +P  
Sbjct: 181 VHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHE 240

Query: 237 ALRSLKEKLLNFSQVRSAAQLGIRLRVLVHRDVIDPILWLRHTFPQLAAAELTLARPSLE 296
             R L ++ L   QV      G  +R+++ ++     +      P++   E T   P  E
Sbjct: 241 GNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETT---PRFE 297

Query: 297 DVFVTVTG 304
           D F+ + G
Sbjct: 298 DAFIDLLG 305