Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 26/225 (11%)

Query: 97  PEDIAVAQARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAH 156
           P+  A   A +A   A+ K A+  +  K +++A  LI + ++DA     + A+A+L    
Sbjct: 79  PDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIA--LIDKGDLDAQL---ERAKAQLKVRQ 133

Query: 157 EEFTKLTA----GARIE-DIEQAKAELAVAQANVTLQQQKLDELTILATRDGILDSLPYH 211
           +EF   +A    G + E     A A L  AQ++++  Q+ LD   + A  DG++++LP  
Sbjct: 134 QEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIE 193

Query: 212 LGERVA-NNAVVAIVQADRLPYARVYVPATHRAAFVVGQTVTVH-VDGIKDQYQGKIRWV 269
            G+ V   + V +I+   +L      V   H     + Q   +  +DG   Q QGK+R++
Sbjct: 194 KGDFVGIGDPVASIIDLHKL-VIEADVSERHIQHVQLEQAARIRFIDG--TQTQGKVRYI 250

Query: 270 ANEPSFTPYYALTEKERSRLMYLAEVDLPESAMDLPSGLPAQVDL 314
           +          L+    +      EVD P+ A  +P+G+ A+V+L
Sbjct: 251 SR---------LSSPATNTFAIEVEVDNPQQA--IPAGVSAEVEL 284



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 11  LALLLSACSAENPPQALGTLER--DRITFSATSNEIIRELPIAEGEHVKVGDVLVKL 65
           +A   +A +  +   +L T++R  D     A  + ++  LPI +G+ V +GD +  +
Sbjct: 151 VAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASI 207