Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Sphingobium sp. HT1-2

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 32/248 (12%)

Query: 47  ELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNK--LTNGE-------RP 97
           E+ + + + VK GDVLVKLD       L QA A  A A+    +   T+G        R 
Sbjct: 74  EVNVTDTQTVKRGDVLVKLDPTDAQIALQQAEADLADARRRFRQTSATSGSLSAQVEARG 133

Query: 98  EDIAVAQARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQA--ELASA 155
            DI  A+A++A A+A   +A + L R+  LVA   +S  EV AAR +  +A+A  +LA A
Sbjct: 134 ADIVQARAQLATAQADFDKARIDLQRREALVAGGAVSGDEVTAARKSYAAAKAALDLARA 193

Query: 156 HEEFTKLTAGARIEDI---------EQAKAELAVAQANVTLQQQKLD-ELTIL-ATRDGI 204
             E  + T  A    +            +++ AV  A   L+  KLD E TI+ A  DG+
Sbjct: 194 GVETAQATRNAATGQLAANDALIRGSTEESDPAVMVAKAKLEDAKLDLERTIIRAPIDGV 253

Query: 205 LDSLPYHLGERVANNAVVAIVQADRLPYARVYVPATHRAAFV----VGQTVTVHVD--GI 258
           +      +G+RVA  + +  +    +P ++VYV A  +   +    VG   TV  D  G 
Sbjct: 254 VTKRAVQIGQRVAQGSPIMSI----VPLSQVYVDANFKERQLRHVKVGMPATVVADIYGG 309

Query: 259 KDQYQGKI 266
              Y GK+
Sbjct: 310 DVVYHGKV 317