Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 16/219 (7%)

Query: 54  EHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVAQARVAKARAQ 113
           + VK GDVLV LD         +A    A +    ++L    +     +   ++A A+AQ
Sbjct: 81  DFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQ 140

Query: 114 HKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFT---KLTAGARIED 170
                   NR+  L    LI + E+  AR A  SAQA+L  A +++     +  G ++ED
Sbjct: 141 SD-----YNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLED 195

Query: 171 IEQAKAELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVA-NNAVVAIVQADR 229
            + A  + A    N  L    L+   I++   G +       G +++    ++A+V A  
Sbjct: 196 -QPAVQQAATEVRNAWL---ALERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATN 251

Query: 230 LPYARVYVPATHRAAFVVGQTVTVHVD--GIKDQYQGKI 266
           + +       T  A   +GQ VT+  D  G   +Y GK+
Sbjct: 252 M-WVDANFKETQIANMRIGQPVTITTDIYGDDVKYTGKV 289