Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., Multidrug resistance efflux pump from Enterobacter asburiae PDN3

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 23/253 (9%)

Query: 32  RDRITF-SATSNEIIRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNK 90
           R + TF S   N  I E+ + +   VK GD+L+++D +I    + QA AQ A   A+LN 
Sbjct: 58  RGQTTFISPQVNGYITEVKVQDFVQVKKGDLLLQIDDRIYRQRVHQAEAQLAMKIAALNN 117

Query: 91  LTNGERPEDIAVAQ--ARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDA--ARSARD 146
                +  +  +A+  A +  ARAQ  + +  L R  +L A   +S  E DA  A +A+ 
Sbjct: 118 NLQQRKSAEATIAKNDAALKNARAQSLKTQADLKRVKDLTADGSLSIRERDAALASAAQG 177

Query: 147 SAQAELASAHEEFTK-------LTAGARIEDIEQAKAELAVAQANVTLQQQKLDELTILA 199
           SA  E A A  E ++       +  GA   D+E AKA L +AQ +       L    I A
Sbjct: 178 SADIEQAKASLEMSRQDLQTVIVNRGALEADVENAKAALELAQID-------LQNTRITA 230

Query: 200 TRDGILDSLPYHLGERV-ANNAVVAIVQADRLPYARVYVPATHRAAFVVGQTVTVHVDGI 258
            RDG L  +   LG  V A   +  +V       A   +  T  A   VGQ V   VD +
Sbjct: 231 PRDGQLGQIAVRLGAYVTAGTHLTTLVPPQHWVIAN--IKETQLAELRVGQPVKFTVDAL 288

Query: 259 KDQ-YQGKIRWVA 270
            ++ YQG++  ++
Sbjct: 289 NNKAYQGRVESIS 301