Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., putative membrane fusion protein (MFP) of efflux pump from Escherichia coli BL21

 Score = 79.7 bits (195), Expect = 9e-20
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 12/317 (3%)

Query: 5   LSIASLLA--LLLSACSAENPPQALGTLERDRITFSATSNEIIRELPIAEGEHVKVGDVL 62
           L++A+++A  LL  A   E    + G +E   +  ++     I  + + EG+ V+ G+VL
Sbjct: 16  LAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGEVL 75

Query: 63  VKLDSQIQTTLLTQALAQQAKAQASL--NKLTNGERPEDIAVAQARVAKARAQHKEAELT 120
            K+D+++      +A+AQ  +AQ+++   +    +R  +   AQ+ V + +A+       
Sbjct: 76  AKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVAKR 135

Query: 121 LNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEF--TKLTAGARIEDIEQAKAEL 178
             R   L  +  IS  ++D  R+A +SA+A L SA  +   +K    A   +I QA+  +
Sbjct: 136 HTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQTRV 195

Query: 179 AVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVANNAVVAIVQADRLPYARVYVP 238
             AQA        +D+  + A RDG +       GE +A    V  +      Y   ++P
Sbjct: 196 EAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLP 255

Query: 239 ATHRAAFVVGQTVTVHVDGIKD-QYQGKIRWVANEPSFTPYYALTEKERSRLMYLAEVDL 297
                   +G    + +D   D +    I +VA+   FTP    T  ER +LM+  +  +
Sbjct: 256 TEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARI 315

Query: 298 PESAMD-----LPSGLP 309
           P   +      + +GLP
Sbjct: 316 PPELLQQHLEYVKTGLP 332